Beyond modular enhancers: new questions in cis-regulatory evolution
JMC McDonald, RD Reed - Trends in Ecology & Evolution, 2024 - cell.com
Our understanding of how cis-regulatory elements work has advanced rapidly, outpacing
our evolutionary models. In this review, we consider the implications of new mechanistic …
our evolutionary models. In this review, we consider the implications of new mechanistic …
Decoding the Functionality of Plant Transcription Factors: Key Factors and Mechanisms
P Dhatterwal, N Sharma… - Journal of Experimental …, 2024 - academic.oup.com
Transcription factors (TFs) intricately govern cellular processes and responses to external
stimuli by modulating gene expressions. TFs help plants to balance the trade-off between …
stimuli by modulating gene expressions. TFs help plants to balance the trade-off between …
bHLH transcription factors cooperate with chromatin remodelers to regulate cell fate decisions during Arabidopsis stomatal development
The development of multicellular organisms requires coordinated changes in gene
expression that are often mediated by the interaction between transcription factors (TFs) and …
expression that are often mediated by the interaction between transcription factors (TFs) and …
[HTML][HTML] Genetic Variations in the NRF2 Microsatellite Contribute to the Regulation of Bovine Sperm-Borne Antioxidant Capacity
K Anwar, G Thaller, M Saeed-Zidane - Cells, 2024 - mdpi.com
Nuclear factor (erythroid-derived 2)-like 2 (NRF2) is a transcription factor protein-coding
gene, considered a master regulator of the cellular stress response. The genetic variations …
gene, considered a master regulator of the cellular stress response. The genetic variations …
[HTML][HTML] Cell fate programming by transcription factors and epigenetic machinery in stomatal development
The development of multi-cellular organisms requires coordinated changes in gene
expression that are often mediated by the interaction between transcription factors (TFs) and …
expression that are often mediated by the interaction between transcription factors (TFs) and …
Characterization of sequence determinants of enhancer function using natural genetic variation
Sequence variation in enhancers that control cell-type-specific gene transcription
contributes significantly to phenotypic variation within human populations. However, it …
contributes significantly to phenotypic variation within human populations. However, it …
Transcription factor-binding k-mer analysis clarifies the cell type dependency of binding specificities and cis-regulatory SNPs in humans
Abstract Background Transcription factors (TFs) exhibit heterogeneous DNA-binding
specificities in individual cells and whole organisms under natural conditions, and de novo …
specificities in individual cells and whole organisms under natural conditions, and de novo …
TIANA: transcription factors cooperativity inference analysis with neural attention
Background Growing evidence suggests that distal regulatory elements are essential for
cellular function and states. The sequences within these distal elements, especially motifs …
cellular function and states. The sequences within these distal elements, especially motifs …
Meta-analysis for Association of Interleukin 4 VNTR Polymorphism with Rheumatoid Arthritis Risk and Severity
Rheumatoid Arthritis (RA) is a chronic autoimmune disease characterized by severe joint
pain. There are conflicting results for the association of Interleukin 4 (IL4) variable number …
pain. There are conflicting results for the association of Interleukin 4 (IL4) variable number …
[HTML][HTML] Microglia replacement by ER-Hoxb8 conditionally immortalized macrophages provides insight into Aicardi-Goutières Syndrome neuropathology
KM Nemec, G Uy, VS Chaluvadi, FS Purnell… - …, 2024 - pmc.ncbi.nlm.nih.gov
Microglia, the brain's resident macrophages, can be reconstituted by surrogate cells-a
process termed “microglia replacement.” To expand the microglia replacement toolkit, we …
process termed “microglia replacement.” To expand the microglia replacement toolkit, we …