[HTML][HTML] Towards monitoring of antimicrobial resistance in the environment: for what reasons, how to implement it, and what are the data needs?
J Bengtsson-Palme, A Abramova, TU Berendonk… - Environment …, 2023 - Elsevier
Antimicrobial resistance (AMR) is a global threat to human and animal health and well-
being. To understand AMR dynamics, it is important to monitor resistant bacteria and …
being. To understand AMR dynamics, it is important to monitor resistant bacteria and …
From microbiome composition to functional engineering, one step at a time
Communities of microorganisms (microbiota) are present in all habitats on Earth and are
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …
[HTML][HTML] A faecal microbiota signature with high specificity for pancreatic cancer
Background Recent evidence suggests a role for the microbiome in pancreatic ductal
adenocarcinoma (PDAC) aetiology and progression. Objective To explore the faecal and …
adenocarcinoma (PDAC) aetiology and progression. Objective To explore the faecal and …
Unraveling the functional dark matter through global metagenomics
Metagenomes encode an enormous diversity of proteins, reflecting a multiplicity of functions
and activities,. Exploration of this vast sequence space has been limited to a comparative …
and activities,. Exploration of this vast sequence space has been limited to a comparative …
Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes
Bacterial specialized metabolites are a proven source of antibiotics and cancer therapies,
but whether we have sampled all the secondary metabolite chemical diversity of cultivated …
but whether we have sampled all the secondary metabolite chemical diversity of cultivated …
Life history strategies of soil bacterial communities across global terrestrial biomes
The life history strategies of soil microbes determine their metabolic potential and their
response to environmental changes. Yet these strategies remain poorly understood. Here …
response to environmental changes. Yet these strategies remain poorly understood. Here …
Drivers and determinants of strain dynamics following fecal microbiota transplantation
Fecal microbiota transplantation (FMT) is a therapeutic intervention for inflammatory
diseases of the gastrointestinal tract, but its clinical mode of action and subsequent …
diseases of the gastrointestinal tract, but its clinical mode of action and subsequent …
A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments
Metagenomic binning is the step in building metagenome-assembled genomes (MAGs)
when sequences predicted to originate from the same genome are automatically grouped …
when sequences predicted to originate from the same genome are automatically grouped …
<? mode longmeta?> SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
Meta'omic data on microbial diversity and function accrue exponentially in public
repositories, but derived information is often siloed according to data type, study or sampled …
repositories, but derived information is often siloed according to data type, study or sampled …
[HTML][HTML] Global marine microbial diversity and its potential in bioprospecting
The past two decades has witnessed a remarkable increase in the number of microbial
genomes retrieved from marine systems,. However, it has remained challenging to translate …
genomes retrieved from marine systems,. However, it has remained challenging to translate …