Toward a “green revolution” for soybean
S Liu, M Zhang, F Feng, Z Tian - Molecular plant, 2020 - cell.com
Soybean (Glycine max), as an economically important food and oilseedcrop, is a major
source of plant proteins and oils. Although considerable progress has been made in …
source of plant proteins and oils. Although considerable progress has been made in …
Super-pangenome by integrating the wild side of a species for accelerated crop improvement
The pangenome provides genomic variations in the cultivated gene pool for a given species.
However, as the crop's gene pool comprises many species, especially wild relatives with …
However, as the crop's gene pool comprises many species, especially wild relatives with …
[HTML][HTML] Pan-genome of wild and cultivated soybeans
Y Liu, H Du, P Li, Y Shen, H Peng, S Liu, GA Zhou… - Cell, 2020 - cell.com
Soybean is one of the most important vegetable oil and protein feed crops. To capture the
entire genomic diversity, it is needed to construct a complete high-quality pan-genome from …
entire genomic diversity, it is needed to construct a complete high-quality pan-genome from …
Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars
G Hu, J Feng, X Xiang, J Wang, J Salojärvi, C Liu… - Nature …, 2022 - nature.com
Lychee is an exotic tropical fruit with a distinct flavor. The genome of cultivar 'Feizixiao'was
assembled into 15 pseudochromosomes, totaling~ 470 Mb. High heterozygosity (2.27%) …
assembled into 15 pseudochromosomes, totaling~ 470 Mb. High heterozygosity (2.27%) …
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files
Motivation Linkage disequilibrium (LD) decay is of great interest in population genetic
studies. However, no tool is available now to do LD decay analysis from variant call format …
studies. However, no tool is available now to do LD decay analysis from variant call format …
Progress in soybean functional genomics over the past decade
M Zhang, S Liu, Z Wang, Y Yuan… - Plant Biotechnology …, 2022 - Wiley Online Library
Soybean is one of the most important oilseed and fodder crops. Benefiting from the efforts of
soybean breeders and the development of breeding technology, large number of …
soybean breeders and the development of breeding technology, large number of …
Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits
We report a map of 4.97 million single-nucleotide polymorphisms of the chickpea from whole-
genome resequencing of 429 lines sampled from 45 countries. We identified 122 candidate …
genome resequencing of 429 lines sampled from 45 countries. We identified 122 candidate …
Genome-and transcriptome-wide association studies provide insights into the genetic basis of natural variation of seed oil content in Brassica napus
Seed oil content (SOC) is a highly important and complex trait in oil crops. Here, we
decipher the genetic basis of natural variation in SOC of Brassica napus by genome-and …
decipher the genetic basis of natural variation in SOC of Brassica napus by genome-and …
Genomic resources in plant breeding for sustainable agriculture
Climate change during the last 40 years has had a serious impact on agriculture and
threatens global food and nutritional security. From over half a million plant species, cereals …
threatens global food and nutritional security. From over half a million plant species, cereals …
Quartet inference from SNP data under the coalescent model
Motivation: Increasing attention has been devoted to estimation of species-level
phylogenetic relationships under the coalescent model. However, existing methods either …
phylogenetic relationships under the coalescent model. However, existing methods either …