Genetic control of root system development in maize

F Hochholdinger, P Yu, C Marcon - Trends in Plant Science, 2018 - cell.com
The maize root system comprises structurally and functionally different root types. Mutant
analyses have revealed that root-type-specific genetic regulators intrinsically determine the …

From hybrid genomes to heterotic trait output: Challenges and opportunities

W Liu, Y Zhang, H He, G He, XW Deng - Current opinion in plant biology, 2022 - Elsevier
Heterosis (or hybrid vigor) has been widely used in crop seed breeding to improve many key
economic traits. Nevertheless, the genetic and molecular basis of this important …

[HTML][HTML] A complete telomere-to-telomere assembly of the maize genome

J Chen, Z Wang, K Tan, W Huang, J Shi, T Li, J Hu… - Nature …, 2023 - nature.com
A complete telomere-to-telomere (T2T) finished genome has been the long pursuit of
genomic research. Through generating deep coverage ultralong Oxford Nanopore …

[HTML][HTML] Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes

S Sun, Y Zhou, J Chen, J Shi, H Zhao, H Zhao… - Nature …, 2018 - nature.com
Maize is an important crop with a high level of genome diversity and heterosis. The genome
sequence of a typical female line, B73, was previously released. Here, we report a de novo …

An expanded maize gene expression atlas based on RNA sequencing and its use to explore root development

SC Stelpflug, RS Sekhon, B Vaillancourt… - The plant …, 2016 - Wiley Online Library
Comprehensive and systematic transcriptome profiling provides valuable insight into
biological and developmental processes that occur throughout the life cycle of a plant. We …

Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis

L Shao, F Xing, C Xu, Q Zhang, J Che… - Proceedings of the …, 2019 - National Acad Sciences
Utilization of heterosis has greatly increased the productivity of many crops worldwide.
Although tremendous progress has been made in characterizing the genetic basis of …

Allele‐specific expression and chromatin accessibility contribute to heterosis in tea plants (Camellia sinensis)

P Wang, M Gu, X Yu, S Shao, J Du, Y Wang… - The Plant …, 2022 - Wiley Online Library
Heterosis is extensively used to improve crop productivity, yet its allelic and chromatin
regulation remains unclear. Based on our resolved genomes of the maternal TGY and …

[HTML][HTML] Functional divergence between subgenomes and gene pairs after whole genome duplications

Z Liang, JC Schnable - Molecular plant, 2018 - cell.com
Gene loss following whole genome duplication (WGD) is often biased, with one subgenome
retaining more ancestral genes and the other sustaining more gene deletions. While bias …

[HTML][HTML] Molecular concepts to explain heterosis in crops

F Hochholdinger, P Yu - Trends in Plant Science, 2024 - cell.com
Heterosis describes the superior performance of hybrid plants compared with their
genetically distinct parents and is a pillar of global food security. Here we review the current …

[HTML][HTML] Dynamic patterns of gene expression additivity and regulatory variation throughout maize development

P Zhou, CN Hirsch, SP Briggs, NM Springer - Molecular plant, 2019 - cell.com
Gene expression variation is a key component underlying phenotypic variation and
heterosis. Transcriptome profiling was performed on 23 different tissues or developmental …