The human microbiome in chronic kidney disease: a double-edged sword

E Wehedy, IF Shatat, S Al Khodor - Frontiers in medicine, 2022 - frontiersin.org
Chronic kidney disease (CKD) is an increasing global health burden. Current treatments for
CKD include therapeutics to target factors that contribute to CKD progression, including …

Urobiome: in sickness and in health

B Wojciuk, A Salabura, B Grygorcewicz, K Kędzierska… - Microorganisms, 2019 - mdpi.com
The human microbiome has been proven to contribute to the human condition, both in
health and in disease. The metagenomic approach based on next-generation sequencing …

Metagraph: Indexing and analysing nucleotide archives at petabase-scale

M Karasikov, H Mustafa, D Danciu, C Barber… - BioRxiv, 2020 - biorxiv.org
The amount of biological sequencing data available in public repositories is growing
exponentially, forming an invaluable biomedical research resource. Yet, making all this …

The plasma viral communities associate with clinical profiles in a large-scale haematological patients cohort

S Ma, Y Yin, Y Guo, C Yao, S Xu, Q Luo, G Yin, S Wang… - Microbiome, 2024 - Springer
Background Haematological patients exhibit immune system abnormalities that make them
susceptible to viral infections. Understanding the relationship between the virome in the …

Blood virosphere in febrile Tanzanian children

S Cordey, F Laubscher, MA Hartley… - Emerging microbes & …, 2021 - Taylor & Francis
Viral infections are the leading cause of childhood acute febrile illnesses motivating
consultation in sub-Saharan Africa. The majority of causal viruses are never identified in low …

Longitudinal study of human polyomaviruses viruria in kidney transplant recipients

M Dolci, C Colico, F Ambrogi, E Favi, L Signorini… - Clinical and …, 2024 - Springer
Introduction Immunosuppression after kidney transplantation (KTx) exposes recipients to
Human Polyomaviruses (HPyVs) infections, whose natural history is still misunderstood …

A generative nonparametric Bayesian model for whole genomes

A Amin, EN Weinstein, D Marks - Advances in Neural …, 2021 - proceedings.neurips.cc
Generative probabilistic modeling of biological sequences has widespread existing and
potential use across biology and biomedicine, particularly given advances in high …

[HTML][HTML] JC and Human polyomavirus 9 after kidney transplantation: An exploratory serological cohort study

S Kamminga, AL van Rijn, CS de Brouwer… - Journal of Clinical …, 2021 - Elsevier
Abstract Introduction Human polyomaviruses (HPyVs) cause disease in
immunocompromised patients. BK polyomavirus (BKPyV) for instance persistently infects the …

Metagenomic next-generation sequencing Versus Traditional Laboratory methods for the diagnosis and Treatment of Infection in liver transplantation

JF Huang, Q Miao, JW Cheng, A Huang… - Frontiers in Cellular …, 2022 - frontiersin.org
Background Metagenomic next-generation sequencing (mNGS) has emerged as an
effective method for the noninvasive and precise detection of infectious pathogens …

The impact of JC viruria on renal transplant recovery and prognosis

Z Zhang, Y Wang, B Gao, B Liu, J Yu, H Zhou - Scientific Reports, 2024 - nature.com
Postoperative JC viruria is common in kidney transplant recipients, however there remains a
dearth of research on perioperative JCV infection in this population. The clinical significance …