Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
A Hakimzadeh, A Abdala Asbun… - Molecular Ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …
monitoring biodiversity in ecology. However, taxa identifications produced through …
Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods
Metazoan metabarcoding is emerging as an essential strategy for inventorying biodiversity,
with diverse projects currently generating massive quantities of community-level data. The …
with diverse projects currently generating massive quantities of community-level data. The …
Speeding up the detection of invasive bivalve species using environmental DNA: A Nanopore and Illumina sequencing comparison
Traditional detection of aquatic invasive species via morphological identification is often time‐
consuming and can require a high level of taxonomic expertise, leading to delayed …
consuming and can require a high level of taxonomic expertise, leading to delayed …
Monitoring of honey bee floral resources with pollen DNA metabarcoding as a complementary tool to vegetation surveys
L Milla, A Schmidt‐Lebuhn, J Bovill… - Ecological Solutions …, 2022 - Wiley Online Library
Monitoring biodiversity is a growing and pressing challenge, particularly as climate change
threatens species with extinction and leads to widespread shifts in plant distribution and …
threatens species with extinction and leads to widespread shifts in plant distribution and …
[HTML][HTML] DNA metabarcoding using nrITS2 provides highly qualitative and quantitative results for airborne pollen monitoring
M Polling, M Sin, LA de Weger… - Science of the Total …, 2022 - Elsevier
Airborne pollen monitoring is of global socio-economic importance as it provides information
on presence and prevalence of allergenic pollen in ambient air. Traditionally, this task has …
on presence and prevalence of allergenic pollen in ambient air. Traditionally, this task has …
Next Generation Sequencing (NGS) approach applied to species identification in mixed processed seafood products
Multi-species fish products are a growing market segment driven by several inputs, including
urbanization, modern lifestyles and the availability of new technologies. These products are …
urbanization, modern lifestyles and the availability of new technologies. These products are …
Cascading effects of moth outbreaks on subarctic soil food webs
The increasing severity and frequency of natural disturbances requires a better
understanding of their effects on all compartments of biodiversity. In Northern Fennoscandia …
understanding of their effects on all compartments of biodiversity. In Northern Fennoscandia …
Beyond the role of climate and soil conditions: living and dead trees matter for soil biodiversity in mountain forests
L Leclerc, I Calderón-Sanou… - Soil Biology and …, 2023 - Elsevier
While forests' contributions to people are intimately linked to their soil biodiversity, little is
known about how forest soil biodiversity is structured and influenced by forest …
known about how forest soil biodiversity is structured and influenced by forest …
Spatial distribution of sedimentary DNA is taxon-specific and linked to local occurrence at intra-lake scale
Y Wang, M Wessels, MW Pedersen… - Communications Earth & …, 2023 - nature.com
Environmental archives, such as lake sediments, harbour DNA of past and present
ecosystems. However, our understanding of the provenance, deposition and distribution of …
ecosystems. However, our understanding of the provenance, deposition and distribution of …