Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

A Hakimzadeh, A Abdala Asbun… - Molecular Ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …

Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods

P Arribas, C Andújar, K Bohmann, JR DeWaard… - …, 2022 - academic.oup.com
Metazoan metabarcoding is emerging as an essential strategy for inventorying biodiversity,
with diverse projects currently generating massive quantities of community-level data. The …

Speeding up the detection of invasive bivalve species using environmental DNA: A Nanopore and Illumina sequencing comparison

B Egeter, J Verissimo, M Lopes‐Lima… - Molecular Ecology …, 2022 - Wiley Online Library
Traditional detection of aquatic invasive species via morphological identification is often time‐
consuming and can require a high level of taxonomic expertise, leading to delayed …

Monitoring of honey bee floral resources with pollen DNA metabarcoding as a complementary tool to vegetation surveys

L Milla, A Schmidt‐Lebuhn, J Bovill… - Ecological Solutions …, 2022 - Wiley Online Library
Monitoring biodiversity is a growing and pressing challenge, particularly as climate change
threatens species with extinction and leads to widespread shifts in plant distribution and …

[HTML][HTML] DNA metabarcoding using nrITS2 provides highly qualitative and quantitative results for airborne pollen monitoring

M Polling, M Sin, LA de Weger… - Science of the Total …, 2022 - Elsevier
Airborne pollen monitoring is of global socio-economic importance as it provides information
on presence and prevalence of allergenic pollen in ambient air. Traditionally, this task has …

Next Generation Sequencing (NGS) approach applied to species identification in mixed processed seafood products

R Piredda, A Mottola, G Cipriano, R Carlucci… - Food Control, 2022 - Elsevier
Multi-species fish products are a growing market segment driven by several inputs, including
urbanization, modern lifestyles and the availability of new technologies. These products are …

Cascading effects of moth outbreaks on subarctic soil food webs

I Calderón-Sanou, T Münkemüller, L Zinger… - Scientific Reports, 2021 - nature.com
The increasing severity and frequency of natural disturbances requires a better
understanding of their effects on all compartments of biodiversity. In Northern Fennoscandia …

Beyond the role of climate and soil conditions: living and dead trees matter for soil biodiversity in mountain forests

L Leclerc, I Calderón-Sanou… - Soil Biology and …, 2023 - Elsevier
While forests' contributions to people are intimately linked to their soil biodiversity, little is
known about how forest soil biodiversity is structured and influenced by forest …

Spatial distribution of sedimentary DNA is taxon-specific and linked to local occurrence at intra-lake scale

Y Wang, M Wessels, MW Pedersen… - Communications Earth & …, 2023 - nature.com
Environmental archives, such as lake sediments, harbour DNA of past and present
ecosystems. However, our understanding of the provenance, deposition and distribution of …