Quantitation in mass-spectrometry-based proteomics
WX Schulze, B Usadel - Annual review of plant biology, 2010 - annualreviews.org
Mass-spectrometry-based proteomics, the large-scale analysis of proteins by mass
spectrometry, has emerged as a new technology over the last decade and become routine …
spectrometry, has emerged as a new technology over the last decade and become routine …
Application of machine learning in spatial proteomics
Spatial proteomics is an interdisciplinary field that investigates the localization and dynamics
of proteins, and it has gained extensive attention in recent years, especially the subcellular …
of proteins, and it has gained extensive attention in recent years, especially the subcellular …
Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics
A Geladaki, N Kočevar Britovšek, LM Breckels… - Nature …, 2019 - nature.com
The study of protein localisation has greatly benefited from high-throughput methods
utilising cellular fractionation and proteomic profiling. Hyperplexed Localisation of Organelle …
utilising cellular fractionation and proteomic profiling. Hyperplexed Localisation of Organelle …
Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods
L Jakobsen, K Vanselow, M Skogs, Y Toyoda… - The EMBO …, 2011 - embopress.org
Centrosomes in animal cells are dynamic organelles with a proteinaceous matrix of
pericentriolar material assembled around a pair of centrioles. They organize the microtubule …
pericentriolar material assembled around a pair of centrioles. They organize the microtubule …
A comparison of labeling and label-free mass spectrometry-based proteomics approaches
VJ Patel, K Thalassinos, SE Slade… - Journal of proteome …, 2009 - ACS Publications
The proteome of the recently discovered bacterium Methylocella silvestris has been
characterized using three profiling and comparative proteomics approaches. The organism …
characterized using three profiling and comparative proteomics approaches. The organism …
Using hyperLOPIT to perform high-resolution mapping of the spatial proteome
CM Mulvey, LM Breckels, A Geladaki, NK Britovšek… - Nature protocols, 2017 - nature.com
The organization of eukaryotic cells into distinct subcompartments is vital for all functional
processes, and aberrant protein localization is a hallmark of many diseases. Microscopy …
processes, and aberrant protein localization is a hallmark of many diseases. Microscopy …
Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation …
G Menschaert, W Van Criekinge, T Notelaers… - Molecular & cellular …, 2013 - ASBMB
An increasing number of studies involve integrative analysis of gene and protein expression
data, taking advantage of new technologies such as next-generation transcriptome …
data, taking advantage of new technologies such as next-generation transcriptome …
Protein neighbors and proximity proteomics
Within cells, proteins can co-assemble into functionally integrated and spatially restricted
multicomponent complexes. Often, the affinities between individual proteins are relatively …
multicomponent complexes. Often, the affinities between individual proteins are relatively …
Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics
The Golgi apparatus is the central organelle in the secretory pathway and plays key roles in
glycosylation, protein sorting, and secretion in plants. Enzymes involved in the biosynthesis …
glycosylation, protein sorting, and secretion in plants. Enzymes involved in the biosynthesis …
Proteomics technologies for the global identification and quantification of proteins
This review provides an introduction for the nonspecialist to proteomics and in particular the
major approaches available for global protein identification and quantification. Proteomics …
major approaches available for global protein identification and quantification. Proteomics …