Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial
Many research questions in fields such as personalized medicine, drug screens or systems
biology depend on obtaining consistent and quantitatively accurate proteomics data from …
biology depend on obtaining consistent and quantitatively accurate proteomics data from …
On the dependency of cellular protein levels on mRNA abundance
The question of how genomic information is expressed to determine phenotypes is of central
importance for basic and translational life science research and has been studied by …
importance for basic and translational life science research and has been studied by …
A review on mass spectrometry-based quantitative proteomics: Targeted and data independent acquisition
V Vidova, Z Spacil - Analytica chimica acta, 2017 - Elsevier
Mass spectrometry (MS) based proteomics have achieved a near-complete proteome
coverage in humans and in several other organisms, producing a wealth of information …
coverage in humans and in several other organisms, producing a wealth of information …
[HTML][HTML] New agents for the treatment of drug-resistant Mycobacterium tuberculosis
DT Hoagland, J Liu, RB Lee, RE Lee - Advanced drug delivery reviews, 2016 - Elsevier
Inadequate dosing and incomplete treatment regimens, coupled with the ability of the
tuberculosis bacilli to cause latent infections that are tolerant of currently used drugs, have …
tuberculosis bacilli to cause latent infections that are tolerant of currently used drugs, have …
A repository of assays to quantify 10,000 human proteins by SWATH-MS
Mass spectrometry is the method of choice for deep and reliable exploration of the (human)
proteome. Targeted mass spectrometry reliably detects and quantifies pre-determined sets …
proteome. Targeted mass spectrometry reliably detects and quantifies pre-determined sets …
[HTML][HTML] Human SRMAtlas: a resource of targeted assays to quantify the complete human proteome
U Kusebauch, DS Campbell, EW Deutsch, CS Chu… - Cell, 2016 - cell.com
The ability to reliably and reproducibly measure any protein of the human proteome in any
tissue or cell type would be transformative for understanding systems-level properties as …
tissue or cell type would be transformative for understanding systems-level properties as …
Building high-quality assay libraries for targeted analysis of SWATH MS data
Targeted proteomics by selected/multiple reaction monitoring (S/MRM) or, on a larger scale,
by SWATH (sequential window acquisition of all theoretical spectra) MS (mass spectrometry) …
by SWATH (sequential window acquisition of all theoretical spectra) MS (mass spectrometry) …
Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses
Liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS) is the main
method for high-throughput identification and quantification of peptides and inferred …
method for high-throughput identification and quantification of peptides and inferred …
Multiplexed peptide analysis using data-independent acquisition and Skyline
Here we describe the use of data-independent acquisition (DIA) on a Q-Exactive mass
spectrometer for the detection and quantification of peptides in complex mixtures using the …
spectrometer for the detection and quantification of peptides in complex mixtures using the …
Absolute proteome composition and dynamics during dormancy and resuscitation of Mycobacterium tuberculosis
Mycobacterium tuberculosis remains a health concern due to its ability to enter a non-
replicative dormant state linked to drug resistance. Understanding transitions into and out of …
replicative dormant state linked to drug resistance. Understanding transitions into and out of …