Advances and opportunities in single-cell transcriptomics for plant research

C Seyfferth, J Renema, JR Wendrich… - Annual Review of …, 2021 - annualreviews.org
Single-cell approaches are quickly changing our view on biological systems by increasing
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …

Learning from co-expression networks: possibilities and challenges

EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …

Regulation of division and differentiation of plant stem cells

E Pierre-Jerome, C Drapek… - Annual review of cell and …, 2018 - annualreviews.org
A major challenge in developmental biology is unraveling the precise regulation of plant
stem cell maintenance and the transition to a fully differentiated cell. In this review, we …

Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

D Shi, V Jouannet, J Agustí, V Kaul, V Levitsky… - The Plant …, 2021 - academic.oup.com
Genome-wide gene expression maps with a high spatial resolution have substantially
accelerated plant molecular science. However, the number of characterized tissues and …

Widespread contamination of Arabidopsis embryo and endosperm transcriptome data sets

MA Schon, MD Nodine - The Plant Cell, 2017 - academic.oup.com
A major goal of global gene expression profiling in plant seeds has been to investigate the
parental contributions to the transcriptomes of early embryos and endosperm. However …

Gene expression variation in Arabidopsis embryos at single-nucleus resolution

P Kao, MA Schon, M Mosiolek, B Enugutti… - …, 2021 - journals.biologists.com
Soon after fertilization of egg and sperm, plant genomes become transcriptionally activated
and drive a series of coordinated cell divisions to form the basic body plan during …

Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo

J Palovaara, S Saiga, JR Wendrich… - Nature Plants, 2017 - nature.com
During early plant embryogenesis, precursors for all major tissues and stem cells are
formed. While several components of the regulatory framework are known, how cell fates are …

Asymmetric cell division in plant development

Y Zhang, T Xu, J Dong - Journal of integrative plant biology, 2023 - Wiley Online Library
Asymmetric cell division (ACD) is a fundamental process that generates new cell types
during development in eukaryotic species. In plant development, post‐embryonic …

Developmental and genomic architecture of plant embryogenesis: from model plant to crops

A Armenta-Medina, CS Gillmor, P Gao… - Plant …, 2021 - cell.com
Embryonic development represents an important reproductive phase of sexually
reproducing plant species. The fusion of egg and sperm produces the plant zygote, a …

RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation

E Murphy, LD Vu, L Van den Broeck… - Journal of …, 2016 - academic.oup.com
In plants, many signalling molecules, such as phytohormones, miRNAs, transcription factors,
and small signalling peptides, drive growth and development. However, very few small …