Advances and opportunities in single-cell transcriptomics for plant research
C Seyfferth, J Renema, JR Wendrich… - Annual Review of …, 2021 - annualreviews.org
Single-cell approaches are quickly changing our view on biological systems by increasing
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …
Learning from co-expression networks: possibilities and challenges
EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …
organization, function and evolution of plant genes is essential to disentangle important …
Regulation of division and differentiation of plant stem cells
E Pierre-Jerome, C Drapek… - Annual review of cell and …, 2018 - annualreviews.org
A major challenge in developmental biology is unraveling the precise regulation of plant
stem cell maintenance and the transition to a fully differentiated cell. In this review, we …
stem cell maintenance and the transition to a fully differentiated cell. In this review, we …
Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures
D Shi, V Jouannet, J Agustí, V Kaul, V Levitsky… - The Plant …, 2021 - academic.oup.com
Genome-wide gene expression maps with a high spatial resolution have substantially
accelerated plant molecular science. However, the number of characterized tissues and …
accelerated plant molecular science. However, the number of characterized tissues and …
Widespread contamination of Arabidopsis embryo and endosperm transcriptome data sets
A major goal of global gene expression profiling in plant seeds has been to investigate the
parental contributions to the transcriptomes of early embryos and endosperm. However …
parental contributions to the transcriptomes of early embryos and endosperm. However …
Gene expression variation in Arabidopsis embryos at single-nucleus resolution
P Kao, MA Schon, M Mosiolek, B Enugutti… - …, 2021 - journals.biologists.com
Soon after fertilization of egg and sperm, plant genomes become transcriptionally activated
and drive a series of coordinated cell divisions to form the basic body plan during …
and drive a series of coordinated cell divisions to form the basic body plan during …
Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo
J Palovaara, S Saiga, JR Wendrich… - Nature Plants, 2017 - nature.com
During early plant embryogenesis, precursors for all major tissues and stem cells are
formed. While several components of the regulatory framework are known, how cell fates are …
formed. While several components of the regulatory framework are known, how cell fates are …
Asymmetric cell division in plant development
Asymmetric cell division (ACD) is a fundamental process that generates new cell types
during development in eukaryotic species. In plant development, post‐embryonic …
during development in eukaryotic species. In plant development, post‐embryonic …
Developmental and genomic architecture of plant embryogenesis: from model plant to crops
Embryonic development represents an important reproductive phase of sexually
reproducing plant species. The fusion of egg and sperm produces the plant zygote, a …
reproducing plant species. The fusion of egg and sperm produces the plant zygote, a …
RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation
In plants, many signalling molecules, such as phytohormones, miRNAs, transcription factors,
and small signalling peptides, drive growth and development. However, very few small …
and small signalling peptides, drive growth and development. However, very few small …