CRISPR screens in plants: approaches, guidelines, and future prospects

C Gaillochet, W Develtere, TB Jacobs - The Plant Cell, 2021 - academic.oup.com
Clustered regularly interspaced short palindromic repeat (CRISPR)-associated systems
have revolutionized genome engineering by facilitating a wide range of targeted DNA …

Large-scale genome editing in plants: approaches, applications, and future perspectives

T Liu, X Zhang, K Li, Q Yao, D Zhong, Q Deng… - Current Opinion in …, 2023 - Elsevier
Highlights•Presented the typical workflow of a CRISPR screen in plants.•Collected and
described appropriate genome editors for large-scale editing in plant.•Envisioned a virus …

CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing

K Labun, TG Montague, M Krause… - Nucleic acids …, 2019 - academic.oup.com
The CRISPR–Cas system is a powerful genome editing tool that functions in a diverse array
of organisms and cell types. The technology was initially developed to induce targeted …

A simple and effective F0 knockout method for rapid screening of behaviour and other complex phenotypes

F Kroll, GT Powell, M Ghosh, G Gestri, P Antinucci… - elife, 2021 - elifesciences.org
Hundreds of human genes are associated with neurological diseases, but translation into
tractable biological mechanisms is lagging. Larval zebrafish are an attractive model to …

The APOE-R136S mutation protects against APOE4-driven Tau pathology, neurodegeneration and neuroinflammation

MR Nelson, P Liu, A Agrawal, O Yip, J Blumenfeld… - Nature …, 2023 - nature.com
Abstract Apolipoprotein E4 (APOE4) is the strongest genetic risk factor for late-onset
Alzheimer's disease (LOAD), leading to earlier age of clinical onset and exacerbating …

[HTML][HTML] Embryo-scale reverse genetics at single-cell resolution

LM Saunders, SR Srivatsan, M Duran, MW Dorrity… - Nature, 2023 - nature.com
The maturation of single-cell transcriptomic technologies has facilitated the generation of
comprehensive cellular atlases from whole embryos,,–. A majority of these data, however …

Simultaneous inhibition of DNA-PK and Polϴ improves integration efficiency and precision of genome editing

S Wimberger, N Akrap, M Firth, J Brengdahl… - Nature …, 2023 - nature.com
Genome editing, specifically CRISPR/Cas9 technology, has revolutionized biomedical
research and offers potential cures for genetic diseases. Despite rapid progress, low …

Global detection of DNA repair outcomes induced by CRISPR–Cas9

M Liu, W Zhang, C Xin, J Yin, Y Shang, C Ai… - Nucleic acids …, 2021 - academic.oup.com
CRISPR–Cas9 generates double-stranded DNA breaks (DSBs) to activate cellular DNA
repair pathways for genome editing. The repair of DSBs leads to small insertions or …

A comprehensive Bioconductor ecosystem for the design of CRISPR guide RNAs across nucleases and technologies

L Hoberecht, P Perampalam, A Lun… - Nature Communications, 2022 - nature.com
The success of CRISPR-mediated gene perturbation studies is highly dependent on the
quality of gRNAs, and several tools have been developed to enable optimal gRNA design …

Efficient and safe therapeutic use of paired Cas9-nickases for primary hyperoxaluria type 1

L Torella, J Klermund, M Bilbao-Arribas… - EMBO Molecular …, 2024 - embopress.org
The therapeutic use of adeno-associated viral vector (AAV)-mediated gene disruption using
CRISPR-Cas9 is limited by potential off-target modifications and the risk of uncontrolled …