Euclidean distance geometry and applications
Euclidean distance geometry is the study of Euclidean geometry based on the concept of
distance. This is useful in several applications where the input data consist of an incomplete …
distance. This is useful in several applications where the input data consist of an incomplete …
Recent advances on the discretizable molecular distance geometry problem
The Molecular Distance Geometry Problem (MDGP) consists in finding an embedding in R3
of a nonnegatively weighted simple undirected graph with the property that the Euclidean …
of a nonnegatively weighted simple undirected graph with the property that the Euclidean …
The discretizable molecular distance geometry problem
Given a simple weighted undirected graph G=(V, E, d) with d: E→ ℝ+, the Molecular
Distance Geometry Problem (MDGP) consists in finding an embedding x: V→ ℝ 3 such …
Distance Geometry Problem (MDGP) consists in finding an embedding x: V→ ℝ 3 such …
Recent advances on the interval distance geometry problem
We discuss a discretization-based solution approach for a classic problem in global
optimization, namely the distance geometry problem (DGP). We focus our attention on a …
optimization, namely the distance geometry problem (DGP). We focus our attention on a …
The interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem with inexact distances
Abstract The Distance Geometry Problem in three dimensions consists in finding an
embedding in R^ 3 of a given nonnegatively weighted simple undirected graph such that …
embedding in R^ 3 of a given nonnegatively weighted simple undirected graph such that …
The discretizable distance geometry problem
We introduce the discretizable distance geometry problem in R^ 3 (DDGP 3), which consists
in a subclass of instances of the Distance Geometry Problem for which an embedding in R …
in a subclass of instances of the Distance Geometry Problem for which an embedding in R …
Discretization orders for distance geometry problems
Given a weighted, undirected simple graph G=(V, E, d)(where d: E → R _+), the distance
geometry problem (DGP) is to determine an embedding x: V → R^ K such that ∀ {i, j\} ∈ E\; …
geometry problem (DGP) is to determine an embedding x: V → R^ K such that ∀ {i, j\} ∈ E\; …
[HTML][HTML] An algorithm to enumerate all possible protein conformations verifying a set of distance constraints
Background The determination of protein structures satisfying distance constraints is an
important problem in structural biology. Whereas the most common method currently …
important problem in structural biology. Whereas the most common method currently …
[HTML][HTML] On the number of realizations of certain Henneberg graphs arising in protein conformation
Several application fields require finding Euclidean coordinates consistent with a set of
distances. More precisely, given a simple undirected edge-weighted graph, we wish to find a …
distances. More precisely, given a simple undirected edge-weighted graph, we wish to find a …
[HTML][HTML] Minimal NMR distance information for rigidity of protein graphs
Abstract Nuclear Magnetic Resonance (NMR) experiments provide distances between
nearby atoms of a protein molecule. The corresponding structure determination problem is …
nearby atoms of a protein molecule. The corresponding structure determination problem is …