A survey on methods for predicting polyadenylation sites from DNA sequences, bulk RNA-seq, and single-cell RNA-seq
Alternative polyadenylation (APA) plays important roles in modulating mRNA stability,
translation, and subcellular localization, and contributes extensively to shaping eukaryotic …
translation, and subcellular localization, and contributes extensively to shaping eukaryotic …
Alternative polyadenylation is a Novel Strategy for the regulation of Gene expression in response to stresses in plants
J Wu, L Ma, Y Cao - International Journal of Molecular Sciences, 2023 - mdpi.com
Precursor message RNA requires processing to generate mature RNA. Cleavage and
polyadenylation at the 3′-end in the maturation of mRNA is one of key processing steps in …
polyadenylation at the 3′-end in the maturation of mRNA is one of key processing steps in …
Accurate transcriptome-wide identification and quantification of alternative polyadenylation from RNA-seq data with APAIQ
Alternative polyadenylation (APA) enables a gene to generate multiple transcripts with
different 3′ ends, which is dynamic across different cell types or conditions. Many …
different 3′ ends, which is dynamic across different cell types or conditions. Many …
Intron mutations and early transcription termination in Duchenne and Becker muscular dystrophy
MA Waldrop, SA Moore, KD Mathews… - Human …, 2022 - Wiley Online Library
DMD pathogenic variants for Duchenne and Becker muscular dystrophy are detectable with
high sensitivity by standard clinical exome analyses of genomic DNA. However, up to 7% of …
high sensitivity by standard clinical exome analyses of genomic DNA. However, up to 7% of …
InPACT: a computational method for accurate characterization of intronic polyadenylation from RNA sequencing data
X Liu, H Chen, Z Li, X Yang, W Jin, Y Wang… - Nature …, 2024 - nature.com
Alternative polyadenylation can occur in introns, termed intronic polyadenylation (IPA), has
been implicated in diverse biological processes and diseases, as it can produce noncoding …
been implicated in diverse biological processes and diseases, as it can produce noncoding …
Dysregulated RNA polyadenylation contributes to metabolic impairment in non-alcoholic fatty liver disease
AM Jobbins, N Haberman, N Artigas… - Nucleic Acids …, 2022 - academic.oup.com
Pre-mRNA processing is an essential mechanism for the generation of mature mRNA and
the regulation of gene expression in eukaryotic cells. While defects in pre-mRNA processing …
the regulation of gene expression in eukaryotic cells. While defects in pre-mRNA processing …
FLIBase: a comprehensive repository of full-length isoforms across human cancers and tissues
Q Shi, X Li, Y Liu, Z Chen, X He - Nucleic Acids Research, 2024 - academic.oup.com
Regulatory processes at the RNA transcript level play a crucial role in generating
transcriptome diversity and proteome composition in human cells, impacting both …
transcriptome diversity and proteome composition in human cells, impacting both …
ipaQTL-atlas: an atlas of intronic polyadenylation quantitative trait loci across human tissues
Functional interpretation of disease-associated non-coding variants remains a significant
challenge in the post-GWAS era. Our recent study has identified 3′ UTR alternative …
challenge in the post-GWAS era. Our recent study has identified 3′ UTR alternative …
Comprehensive characterization of somatic variants associated with intronic polyadenylation in human cancers
Somatic single nucleotide variants (SNVs) in cancer genome affect gene expression through
various mechanisms depending on their genomic location. While somatic SNVs near …
various mechanisms depending on their genomic location. While somatic SNVs near …
The peptide woods are lovely, dark and deep: Hunting for novel cancer antigens
Harnessing the patient's immune system to control a tumor is a proven avenue for cancer
therapy. T cell therapies as well as therapeutic vaccines, which target specific antigens of …
therapy. T cell therapies as well as therapeutic vaccines, which target specific antigens of …