The role of enhancers in cancer

I Sur, J Taipale - Nature Reviews Cancer, 2016 - nature.com
Enhancer elements function as the logic gates of the genetic regulatory circuitry. One of their
most important functions is the integration of extracellular signals with intracellular cell fate …

[HTML][HTML] Morphogenesis and maturation of the embryonic and postnatal intestine

AM Chin, DR Hill, M Aurora, JR Spence - Seminars in cell & developmental …, 2017 - Elsevier
The intestine is a vital organ responsible for nutrient absorption, bile and waste excretion,
and a major site of host immunity. In order to keep up with daily demands, the intestine has …

Prenatal maternal infection promotes tissue-specific immunity and inflammation in offspring

AI Lim, T McFadden, VM Link, SJ Han, RM Karlsson… - Science, 2021 - science.org
INTRODUCTION One fundamental property of the immune system is its ability to develop
memory of previous encounters, resulting in enhanced responsiveness to subsequent …

Annotation of functional variation in personal genomes using RegulomeDB

AP Boyle, EL Hong, M Hariharan, Y Cheng… - Genome …, 2012 - genome.cshlp.org
As the sequencing of healthy and disease genomes becomes more commonplace, detailed
annotation provides interpretation for individual variation responsible for normal and …

Charting human development using a multi-endodermal organ atlas and organoid models

Q Yu, U Kilik, EM Holloway, YH Tsai, C Harmel, A Wu… - Cell, 2021 - cell.com
Organs are composed of diverse cell types that traverse transient states during
organogenesis. To interrogate this diversity during human development, we generate a …

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage

JA Wamstad, JM Alexander, RM Truty, A Shrikumar… - Cell, 2012 - cell.com
Heart development is exquisitely sensitive to the precise temporal regulation of thousands of
genes that govern developmental decisions during differentiation. However, we currently …

Dynamic reorganization of chromatin accessibility signatures during dedifferentiation of secretory precursors into Lgr5+ intestinal stem cells

U Jadhav, M Saxena, NK O'Neill, A Saadatpour… - Cell stem cell, 2017 - cell.com
Replicating Lgr5+ stem cells and quiescent Bmi1+ cells behave as intestinal stem cells
(ISCs) in vivo. Disrupting Lgr5+ ISCs triggers epithelial renewal from Bmi1+ cells, from …

Dissecting engineered cell types and enhancing cell fate conversion via CellNet

SA Morris, P Cahan, H Li, AM Zhao, AK San Roman… - Cell, 2014 - cell.com
Engineering clinically relevant cells in vitro holds promise for regenerative medicine, but
most protocols fail to faithfully recapitulate target cell properties. To address this, we …

Enhancers as information integration hubs in development: lessons from genomics

C Buecker, J Wysocka - Trends in Genetics, 2012 - cell.com
Transcriptional enhancers are the primary determinants of tissue-specific gene expression.
Although the majority of our current knowledge of enhancer elements comes from detailed …

A reinforcing HNF4–SMAD4 feed-forward module stabilizes enterocyte identity

L Chen, NH Toke, S Luo, RP Vasoya, RL Fullem… - Nature …, 2019 - nature.com
BMP/SMAD signaling is a crucial regulator of intestinal differentiation,,–. However, the
molecular underpinnings of the BMP pathway in this context are unknown. Here, we …