Single-cell omics: experimental workflow, data analyses and applications
Cells are the fundamental units of biological systems and exhibit unique development
trajectories and molecular features. Our exploration of how the genomes orchestrate the …
trajectories and molecular features. Our exploration of how the genomes orchestrate the …
Deep single-cell RNA-seq data clustering with graph prototypical contrastive learning
Motivation Single-cell RNA sequencing enables researchers to study cellular heterogeneity
at single-cell level. To this end, identifying cell types of cells with clustering techniques …
at single-cell level. To this end, identifying cell types of cells with clustering techniques …
scDCCA: deep contrastive clustering for single-cell RNA-seq data based on auto-encoder network
J Wang, J Xia, H Wang, Y Su… - Briefings in …, 2023 - academic.oup.com
The advances in single-cell ribonucleic acid sequencing (scRNA-seq) allow researchers to
explore cellular heterogeneity and human diseases at cell resolution. Cell clustering is a …
explore cellular heterogeneity and human diseases at cell resolution. Cell clustering is a …
[HTML][HTML] Artificial intelligence and machine learning applications for cultured meat
Cultured meat has the potential to provide a complementary meat industry with reduced
environmental, ethical, and health impacts. However, major technological challenges …
environmental, ethical, and health impacts. However, major technological challenges …
Deep learning in single-cell analysis
Single-cell technologies are revolutionizing the entire field of biology. The large volumes of
data generated by single-cell technologies are high dimensional, sparse, and …
data generated by single-cell technologies are high dimensional, sparse, and …
scLEGA: an attention-based deep clustering method with a tendency for low expression of genes on single-cell RNA-seq data
Z Liu, Y Liang, G Wang, T Zhang - Briefings in Bioinformatics, 2024 - academic.oup.com
Single-cell RNA sequencing (scRNA-seq) enables the exploration of biological
heterogeneity among different cell types within tissues at a resolution. Inferring cell types …
heterogeneity among different cell types within tissues at a resolution. Inferring cell types …
scGGAN: single-cell RNA-seq imputation by graph-based generative adversarial network
Z Huang, J Wang, X Lu, A Mohd Zain… - Briefings in …, 2023 - academic.oup.com
Single-cell RNA sequencing (scRNA-seq) data are typically with a large number of missing
values, which often results in the loss of critical gene signaling information and seriously …
values, which often results in the loss of critical gene signaling information and seriously …
Effective multi-modal clustering method via skip aggregation network for parallel scRNA-seq and scATAC-seq data
In recent years, there has been a growing trend in the realm of parallel clustering analysis
for single-cell RNA-seq (scRNA) and single-cell Assay of Transposase Accessible …
for single-cell RNA-seq (scRNA) and single-cell Assay of Transposase Accessible …
A graph neural network approach for the analysis of siRNA-target biological networks
Many biological systems are characterised by biological entities, as well as their
relationships. These interaction networks can be modelled as graphs, with nodes …
relationships. These interaction networks can be modelled as graphs, with nodes …
scEGG: an exogenous gene-guided clustering method for single-cell transcriptomic data
In recent years, there has been significant advancement in the field of single-cell data
analysis, particularly in the development of clustering methods. Despite these …
analysis, particularly in the development of clustering methods. Despite these …