Evaluation of measures of correctness of genotype imputation in the context of genomic prediction: a review of livestock applications
In livestock, many studies have reported the results of imputation to 50k single nucleotide
polymorphism (SNP) genotypes for animals that are genotyped with low-density SNP …
polymorphism (SNP) genotypes for animals that are genotyped with low-density SNP …
Advances in Biomedical Missing Data Imputation: A Survey
M Barrabés, M Perera, VN Moriano… - IEEE …, 2024 - ieeexplore.ieee.org
Ensuring good data quality in biomedical sciences is crucial for reliable research outcomes,
particularly as precision medicine continues to gain prominence. Missing values …
particularly as precision medicine continues to gain prominence. Missing values …
The development of a porcine 50K SNP panel using genotyping by target sequencing and its application1
Z ZHANG, S XING, QIU Ao, N ZHANG, W WANG… - Journal of Integrative …, 2023 - Elsevier
Genotyping by target sequencing (GBTS) integrates the advantages of silicon-based
technology (high stability and reliability) and genotyping by sequencing (high flexibility and …
technology (high stability and reliability) and genotyping by sequencing (high flexibility and …
Recombination locations and rates in beef cattle assessed from parent-offspring pairs
Background Recombination events tend to occur in hotspots and vary in number among
individuals. The presence of recombination influences the accuracy of haplotype phasing …
individuals. The presence of recombination influences the accuracy of haplotype phasing …
[HTML][HTML] 猪SNP 液相芯片10K~ 50K 基因型填充效果研究
陈宇， 邱奥， 张梓鹏， 都鹤鹤， 白俊艳， 王贵江， 罗文学… - 畜牧兽医学报, 2022 - html.rhhz.net
旨在探究低密度液相芯片在生产实践中的实用性, 降低育种成本. 本试验选用了3 761 头约160
日龄, 110 kg 左右健康大白猪, 随机抽取100 头大白猪, 根据10K 芯片标记信息, 从50K …
日龄, 110 kg 左右健康大白猪, 随机抽取100 头大白猪, 根据10K 芯片标记信息, 从50K …
Genotype imputation from various low-density SNP panels and its impact on accuracy of genomic breeding values in pigs
The uptake of genomic selection (GS) by the swine industry is still limited by the costs of
genotyping. A feasible alternative to overcome this challenge is to genotype animals using …
genotyping. A feasible alternative to overcome this challenge is to genotype animals using …
A chromosomal inversion may facilitate adaptation despite periodic gene flow in a freshwater fish
Differences in genomic architecture between populations, such as chromosomal inversions,
may play an important role in facilitating adaptation despite opportunities for gene flow. One …
may play an important role in facilitating adaptation despite opportunities for gene flow. One …
Identifying low-density, ancestry-informative SNP markers through whole genome resequencing in Indian, Chinese, and wild yak
The current investigation was undertaken to elucidate the population-stratifying and ancestry-
informative markers in Indian, Chinese, and wild yak populations using whole genome …
informative markers in Indian, Chinese, and wild yak populations using whole genome …
[HTML][HTML] Imputation accuracy from low to moderate density single nucleotide polymorphism chips in a Thai multibreed dairy cattle population
The objective of this study was to investigate the accuracy of imputation from low density
(LDC) to moderate density SNP chips (MDC) in a Thai Holstein-Other multibreed dairy cattle …
(LDC) to moderate density SNP chips (MDC) in a Thai Holstein-Other multibreed dairy cattle …
[HTML][HTML] Genotype imputation in a tropical crossbred dairy cattle population
The objective of this study was to investigate different strategies for genotype imputation in a
population of crossbred Girolando (Gyr× Holstein) dairy cattle. The data set consisted of 478 …
population of crossbred Girolando (Gyr× Holstein) dairy cattle. The data set consisted of 478 …