SSDraw: software for generating comparative protein secondary structure diagrams
The program SSDraw generates publication‐quality protein secondary structure diagrams
from three‐dimensional protein structures. To depict relationships between secondary …
from three‐dimensional protein structures. To depict relationships between secondary …
[HTML][HTML] Enhancing molecular visualization: Perceptual evaluation of line variables with application to uncertainty visualization
Data are often subject to some degree of uncertainty, whether aleatory or epistemic. This
applies both to experimental data acquired with sensors as well as to simulation data …
applies both to experimental data acquired with sensors as well as to simulation data …
From complex data to clear insights: visualizing molecular dynamics trajectories
Advances in simulations, combined with technological developments in high-performance
computing, have made it possible to produce a physically accurate dynamic representation …
computing, have made it possible to produce a physically accurate dynamic representation …
Visual Support for the Loop Grafting Workflow on Proteins
F Opálený, P Ulbrich, J Planas-Iglesias… - … on Visualization and …, 2024 - ieeexplore.ieee.org
In understanding and redesigning the function of proteins in modern biochemistry, protein
engineers are increasingly focusing on exploring regions in proteins called loops. Analyzing …
engineers are increasingly focusing on exploring regions in proteins called loops. Analyzing …
Protein super-secondary structure and quaternary structure topology: theoretical description and application
Highlights•Protein topologies are useful abstractions to describe protein structures.•Graph-
theoretic methods uniquely describe and classify protein topologies.•Exploration of protein …
theoretic methods uniquely describe and classify protein topologies.•Exploration of protein …
Uncertainty visualization for secondary structures of proteins
We present a technique that conveys the uncertainty in the secondary structure of proteins-
an abstraction model based on atomic coordinates. While protein data inherently contains …
an abstraction model based on atomic coordinates. While protein data inherently contains …
Nanotoxicity of two-dimensional nanomaterials on human skin and the structural evolution of keratin protein
Abstract Two-dimensional (2D) materials have been increasingly widely used in biomedical
and cosmetical products nowadays, yet their safe usage in human body and environment …
and cosmetical products nowadays, yet their safe usage in human body and environment …
[PDF][PDF] Perceptual Evaluation of Common Line Variables for Displaying Uncertainty on Molecular Surfaces.
Data are often subject to some degree of uncertainty, whether aleatory or epistemic. This
applies both to experimental data acquired with sensors as well as to simulation data …
applies both to experimental data acquired with sensors as well as to simulation data …
Bioinformatics in drug design and delivery
Bioinformatics is the one-stop solution to the problems in drug designing like large capital
investments, human resources, technological expertise, regulations, and deadlines. Even …
investments, human resources, technological expertise, regulations, and deadlines. Even …
Advances in Structural Bioinformatics
Structural bioinformatics is a captivating discipline that delves into the intricate realm related
to proteins, RNA, and DNA, the macromolecules of life. Its primary focus lies in …
to proteins, RNA, and DNA, the macromolecules of life. Its primary focus lies in …