Sequence capture versus restriction site associated DNA sequencing for shallow systematics
Sequence capture and restriction site associated DNA sequencing (RAD-Seq) are two
genomic enrichment strategies for applying next-generation sequencing technologies to …
genomic enrichment strategies for applying next-generation sequencing technologies to …
Deriving genotypes from RAD-seq short-read data using Stacks
NC Rochette, JM Catchen - Nature protocols, 2017 - nature.com
Restriction site-associated DNA sequencing (RAD-seq) allows for the genome-wide
discovery and genotyping of single-nucleotide polymorphisms in hundreds of individuals at …
discovery and genotyping of single-nucleotide polymorphisms in hundreds of individuals at …
Genomic approaches to understanding population divergence and speciation in birds
The widespread application of high-throughput sequencing in studying evolutionary
processes and patterns of diversification has led to many important discoveries. However …
processes and patterns of diversification has led to many important discoveries. However …
Species delimitation in endangered groundwater salamanders: Implications for aquifer management and biodiversity conservation
Groundwater-dependent species are among the least-known components of global
biodiversity, as well as some of the most vulnerable because of rapid groundwater depletion …
biodiversity, as well as some of the most vulnerable because of rapid groundwater depletion …
Parallel ddRAD and genome skimming analyses reveal a radiative and reticulate evolutionary history of the temperate bamboos
Rapid evolutionary radiations are among the most challenging phylogenetic problems,
wherein different types of data (eg, morphology and molecular) or genetic markers (eg …
wherein different types of data (eg, morphology and molecular) or genetic markers (eg …
Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage
Next‐generation sequencing of reduced‐representation genomic libraries provides a
powerful methodology for genotyping thousands of single‐nucleotide polymorphisms (SNP …
powerful methodology for genotyping thousands of single‐nucleotide polymorphisms (SNP …
Selecting RAD-Seq data analysis parameters for population genetics: the more the better?
N Díaz-Arce, N Rodríguez-Ezpeleta - Frontiers in genetics, 2019 - frontiersin.org
Restriction site-associated DNA sequencing (RAD-seq) has become a powerful and widely
used tool in molecular ecology studies as it allows to cost-effectively recover thousands of …
used tool in molecular ecology studies as it allows to cost-effectively recover thousands of …
Habitat association predicts genetic diversity and population divergence in Amazonian birds
The ecological traits of organisms may predict their genetic diversity and population genetic
structure and mediate the action of evolutionary processes important for speciation and …
structure and mediate the action of evolutionary processes important for speciation and …
Resolving recent plant radiations: power and robustness of genotyping-by-sequencing
M Fernández-Mazuecos, G Mellers… - Systematic …, 2018 - academic.oup.com
Disentangling species boundaries and phylogenetic relationships within recent evolutionary
radiations is a challenge due to the poor morphological differentiation and low genetic …
radiations is a challenge due to the poor morphological differentiation and low genetic …
An empirical pipeline for choosing the optimal clustering threshold in RADseq studies
E McCartney‐Melstad, M Gidiş… - Molecular Ecology …, 2019 - Wiley Online Library
Genomic data are increasingly used for high resolution population genetic studies including
those at the forefront of biological conservation. A key methodological challenge is …
those at the forefront of biological conservation. A key methodological challenge is …