MALDI imaging combined with hierarchical clustering as a new tool for the interpretation of complex human cancers
SO Deininger, MP Ebert, A Futterer… - Journal of proteome …, 2008 - ACS Publications
Proteomics analyses have been exploited for the discovery of novel biomarkers for the early
recognition and prognostic stratification of cancer patients. These analyses have now been …
recognition and prognostic stratification of cancer patients. These analyses have now been …
Spatial and spectral correlations in MALDI mass spectrometry images by clustering and multivariate analysis
G McCombie, D Staab, M Stoeckli… - Analytical …, 2005 - ACS Publications
Matrix-assisted laser desorption/ionization mass spectrometry imaging is a technique for
direct analysis of tissue sections without the use of molecular tags or contrast agents. The …
direct analysis of tissue sections without the use of molecular tags or contrast agents. The …
Chemical microscopy applied to biological systems
M Navratil, GA Mabbott, EA Arriaga - Analytical chemistry, 2006 - ACS Publications
The ideal bioanalytical method is one that would allow the researcher to carry out sensitive,
selective, reproducible, fast, and in situ chemical measurements of the composition and …
selective, reproducible, fast, and in situ chemical measurements of the composition and …
Multivariate analysis of ToF‐SIMS data for biological applications
Applications of time‐of‐flight secondary ion mass spectrometry (ToF‐SIMS) were
demonstrated, focusing on multivariate analysis (MVA) such as principal component …
demonstrated, focusing on multivariate analysis (MVA) such as principal component …
A perspective on two chemometrics tools: PCA and MCR, and introduction of a new one: Pattern recognition entropy (PRE), as applied to XPS and ToF-SIMS depth …
X-ray photoelectron spectroscopy (XPS) and time-of-flight secondary ion mass spectrometry
(ToF-SIMS) are much used analytical techniques that provide information about the …
(ToF-SIMS) are much used analytical techniques that provide information about the …
Matrix‐free detection of intact ions from proteins in argon‐cluster secondary ion mass spectrometry
K Mochiji, M Hashinokuchi, K Moritani… - … in Mass Spectrometry …, 2009 - Wiley Online Library
In the secondary ion mass spectrometry (SIMS) of organic substances, the molecular weight
of the intact ions currently detectable is at best only as high as 1000 Da, which for all …
of the intact ions currently detectable is at best only as high as 1000 Da, which for all …
Tutorial: multivariate statistical treatment of imaging data for clinical biomarker discovery
SO Deininger, M Becker, D Suckau - Mass spectrometry imaging …, 2010 - Springer
Cancer research is one of the most promising application areas for the new technology of
MALDI tissue imaging. Cancerous tissue can easily be distinguished from healthy tissue by …
MALDI tissue imaging. Cancerous tissue can easily be distinguished from healthy tissue by …
Using pattern recognition entropy to select mass chromatograms to prepare total ion current chromatograms from raw liquid chromatography–mass spectrometry data
The total ion current chromatogram (TICC) obtained by liquid–chromatography-mass
spectrometry (LC–MS) is often extremely complex and 'noisy'in appearance, particularly …
spectrometry (LC–MS) is often extremely complex and 'noisy'in appearance, particularly …
Review of TOF‐SIMS bioanalysis using mutual information
S Aoyagi - Surface and Interface Analysis: An International …, 2009 - Wiley Online Library
The evaluation of proteins on biodevices, such as the distribution or orientation of
immobilized proteins, is one of the most important issues for the development of …
immobilized proteins, is one of the most important issues for the development of …
Reordered (sorted) spectra. A tool for understanding pattern recognition entropy (PRE) and spectra in general
S Chatterjee, MR Linford - Bulletin of the Chemical Society of …, 2018 - academic.oup.com
Abstract Pattern Recognition Entropy (PRE) is a summary statistic for comparing and
understanding spectra. Here we introduce the concept of the 'reordered spectrum'in the …
understanding spectra. Here we introduce the concept of the 'reordered spectrum'in the …