Multi-scale modelling and simulation in systems biology

JO Dada, P Mendes - Integrative Biology, 2011 - academic.oup.com
The aim of systems biology is to describe and understand biology at a global scale where
biological functions are recognised as a result of complex mechanisms that happen at …

The virtual cell—a candidate co-ordinator for 'middle-out'modelling of biological systems

DC Walker, J Southgate - Briefings in bioinformatics, 2009 - academic.oup.com
Understanding the functioning of biological systems depends on tackling complexity
spanning spatial scales from genome to organ to whole organism. The basic unit of life, the …

Multiscale modelling and simulation: a position paper

A Hoekstra, B Chopard… - … Transactions of the …, 2014 - royalsocietypublishing.org
We argue that, despite the fact that the field of multiscale modelling and simulation has
enjoyed significant success within the past decade, it still holds many open questions that …

The application of multiscale modelling to the process of development and prevention of stenosis in a stented coronary artery

DJW Evans, PV Lawford, J Gunn… - … of the Royal …, 2008 - royalsocietypublishing.org
The inherent complexity of biomedical systems is well recognized; they are multiscale,
multiscience systems, bridging a wide range of temporal and spatial scales. While the …

Multi-scale modelling in computational biomedicine

PMA Sloot, AG Hoekstra - Briefings in bioinformatics, 2010 - academic.oup.com
The inherent complexity of biomedical systems is well recognized; they are multi-scale, multi-
science systems, bridging a wide range of temporal and spatial scales. This article reviews …

[HTML][HTML] Distributed multiscale computing with MUSCLE 2, the multiscale coupling library and environment

J Borgdorff, M Mamonski, B Bosak, K Kurowski… - Journal of …, 2014 - Elsevier
Abstract We present the Multiscale Coupling Library and Environment: MUSCLE 2. This
multiscale component-based execution environment has a simple to use Java, C++, C …

Foundations of distributed multiscale computing: Formalization, specification, and analysis

J Borgdorff, JL Falcone, E Lorenz… - Journal of Parallel and …, 2013 - Elsevier
Inherently complex problems from many scientific disciplines require a multiscale modeling
approach. Yet its practical contents remain unclear and inconsistent. Moreover, multiscale …

Mastering the scales: a survey on the benefits of multiscale computing software

D Groen, J Knap, P Neumann… - … of the Royal …, 2019 - royalsocietypublishing.org
In the last few decades, multiscale modelling has emerged as one of the dominant
modelling paradigms in many areas of science and engineering. Its rise to dominance is …

A complex automata approach for in-stent restenosis: two-dimensional multiscale modelling and simulations

A Caiazzo, D Evans, JL Falcone, J Hegewald… - Journal of computational …, 2011 - Elsevier
In-stent restenosis, the maladaptive response of a blood vessel to injury caused by the
deployment of a stent, is a multiscale system involving a large number of biological and …

MML: towards a multiscale modeling language

JL Falcone, B Chopard, A Hoekstra - Procedia Computer Science, 2010 - Elsevier
Recent multiscale applications require more and more often the coupling of many sub-
models, usually originating form different fields of science. Therefore, it is increasingly …