Methods for linkage disequilibrium mapping in crops

I Mackay, W Powell - Trends in plant science, 2007 - cell.com
Linkage disequilibrium (LD) mapping in plants detects and locates quantitative trait loci
(QTL) by the strength of the correlation between a trait and a marker. It offers greater …

Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay

E Akhunov, C Nicolet, J Dvorak - Theoretical and Applied Genetics, 2009 - Springer
Single nucleotide polymorphisms (SNPs) are indispensable in such applications as
association mapping and construction of high-density genetic maps. These applications …

Comprehensive Assessment of Metabolic Enzyme and Transporter Genes Using the Affymetrix® Targeted Genotyping System

C Dumaual, X Miao, TM Daly, C Bruckner… - …, 2007 - Taylor & Francis
The combined effects of multiple polymorphisms in several drug-metabolizing enzyme and
transporter genes can contribute to considerable interindividual variation in drug disposition …

A wing expressed sequence tag resource for Bicyclus anynana butterflies, an evo-devo model

P Beldade, S Rudd, JD Gruber, AD Long - BMC genomics, 2006 - Springer
Background Butterfly wing color patterns are a key model for integrating evolutionary
developmental biology and the study of adaptive morphological evolution. Yet, despite the …

Comparative genomics of the mimicry switch in Papilio dardanus

MJTN Timmermans, SW Baxter… - … of the Royal …, 2014 - royalsocietypublishing.org
The African Mocker Swallowtail, Papilio dardanus, is a textbook example in evolutionary
genetics. Classical breeding experiments have shown that wing pattern variation in this …

Genetic monitoring in natural perennial plant populations

FA Aravanopoulos - Botany, 2011 - cdnsciencepub.com
Genetic monitoring, the quantification of temporal changes in population genetics and
dynamics metrics generated by using appropriate parameters, constitutes a method with a …

High-resolution, high-throughput SNP mapping in Drosophila melanogaster

D Chen, A Ahlford, F Schnorrer, I Kalchhauser… - Nature …, 2008 - nature.com
Single nucleotide polymorphisms (SNPs) are useful markers for genetic mapping
experiments in model organisms. Here we report the establishment of a high-density SNP …

Joint Estimates of Quantitative Trait Locus Effect and Frequency Using Synthetic Recombinant Populations of Drosophila melanogaster

SJ Macdonald, AD Long - Genetics, 2007 - academic.oup.com
We develop and implement a strategy to map QTL in two synthetic populations of Drosophila
melanogaster each initiated with eight inbred founder strains. These recombinant …

Fine-scale mapping of natural variation in fly fecundity identifies neuronal domain of expression and function of an aquaporin

AO Bergland, H Chae, YJ Kim, M Tatar - PLoS genetics, 2012 - journals.plos.org
To gain insight into the molecular genetic basis of standing variation in fitness related traits,
we identify a novel factor that regulates the molecular and physiological basis of natural …

Multiple Quantitative Trait Loci Influence the Shape of a Male-Specific Genital Structure in Drosophila melanogaster

CL McNeil, CL Bain… - G3: Genes| Genomes …, 2011 - academic.oup.com
The observation that male genitalia diverge more rapidly than other morphological traits
during evolution is taxonomically widespread and likely due to some form of sexual …