Strains, functions and dynamics in the expanded Human Microbiome Project
The characterization of baseline microbial and functional diversity in the human microbiome
has enabled studies of microbiome-related disease, diversity, biogeography, and molecular …
has enabled studies of microbiome-related disease, diversity, biogeography, and molecular …
Staphylococcus aureus and Staphylococcus epidermidis strain diversity underlying pediatric atopic dermatitis
AL Byrd, C Deming, SKB Cassidy… - Science translational …, 2017 - science.org
The heterogeneous course, severity, and treatment responses among patients with atopic
dermatitis (AD; eczema) highlight the complexity of this multifactorial disease. Prior studies …
dermatitis (AD; eczema) highlight the complexity of this multifactorial disease. Prior studies …
[HTML][HTML] Temporal stability of the human skin microbiome
Biogeography and individuality shape the structural and functional composition of the
human skin microbiome. To explore these factors' contribution to skin microbial community …
human skin microbiome. To explore these factors' contribution to skin microbial community …
Natural transformation facilitates transfer of transposons, integrons and gene cassettes between bacterial species
We have investigated to what extent natural transformation acting on free DNA substrates
can facilitate transfer of mobile elements including transposons, integrons and/or gene …
can facilitate transfer of mobile elements including transposons, integrons and/or gene …
Next-Generation “-omics” Approaches Reveal a Massive Alteration of Host RNA Metabolism during Bacteriophage Infection of Pseudomonas aeruginosa
As interest in the therapeutic and biotechnological potentials of bacteriophages has grown,
so has value in understanding their basic biology. However, detailed knowledge of infection …
so has value in understanding their basic biology. However, detailed knowledge of infection …
MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation
Genome annotation is one of the key actions that must be undertaken in order to decipher
the genetic blueprint of organisms. Thus, a correct and reliable annotation is essential in …
the genetic blueprint of organisms. Thus, a correct and reliable annotation is essential in …
Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria
Marine picocyanobacteria of the genera Prochlorococcus and Synechococcus are the most
abundant photosynthetic organisms on Earth, an ecological success thought to be linked to …
abundant photosynthetic organisms on Earth, an ecological success thought to be linked to …
Comparative Metagenome-Assembled Genome Analysis of “Candidatus Lachnocurva vaginae”, Formerly Known as Bacterial Vaginosis-Associated Bacterium−1 …
Bacterial vaginosis-associated bacterium 1 (BVAB1) is an as-yet uncultured bacterial
species found in the human vagina that belongs to the family Lachnospiraceae within the …
species found in the human vagina that belongs to the family Lachnospiraceae within the …
Genomic diversity of EPEC associated with clinical presentations of differing severity
TH Hazen, MS Donnenberg, S Panchalingam… - Nature …, 2016 - nature.com
Enteropathogenic Escherichia coli (EPEC) are diarrhoeagenic E. coli, and are a significant
cause of gastrointestinal illness among young children in developing countries. Typical …
cause of gastrointestinal illness among young children in developing countries. Typical …
Resolving the complexity of human skin metagenomes using single-molecule sequencing
YC Tsai, S Conlan, C Deming… - MBio, 2016 - Am Soc Microbiol
Deep metagenomic shotgun sequencing has emerged as a powerful tool to interrogate
composition and function of complex microbial communities. Computational approaches to …
composition and function of complex microbial communities. Computational approaches to …