The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

International Peach Genome Initiative, I Verde… - Nature …, 2013 - nature.com
Rosaceae is the most important fruit-producing clade, and its key commercially relevant
genera (Fragaria, Rosa, Rubus and Prunus) show broadly diverse growth habits, fruit types …

GapFiller: a de novo assembly approach to fill the gap within paired reads

F Nadalin, F Vezzi, A Policriti - BMC bioinformatics, 2012 - Springer
Abstract Background Next Generation Sequencing technologies are able to provide high
genome coverages at a relatively low cost. However, due to limited reads' length (from 30 bp …

Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach

R Falchi, E Vendramin, L Zanon, S Scalabrin… - The Plant …, 2013 - Wiley Online Library
Peach flesh color (white or yellow) is among the most popular commercial criteria for peach
classification, and has implications for consumer acceptance and fruit nutritional quality …

Strobealign: flexible seed size enables ultra-fast and accurate read alignment

K Sahlin - Genome Biology, 2022 - Springer
Read alignment is often the computational bottleneck in analyses. Recently, several
advances have been made on seeding methods for fast sequence comparison. We combine …

Recent toolset of metagenomics for taxonomical and functional annotation of marine associated viruses: A review

AB Fulke, S Eranezhath, S Raut, HS Jadhav - Regional Studies in Marine …, 2024 - Elsevier
The most prevalent biological species on earth are viruses, the majority of which infect
bacteria. Less than 1% of microbial hosts have been cultured, making it difficult to identify …

Analytical router modeling for networks-on-chip performance analysis

UY Ogras, R Marculescu - 2007 Design, Automation & Test in …, 2007 - ieeexplore.ieee.org
Networks-on-chip (NoCs) have recently emerged as a scalable alternative to classical bus
and point-to-point architectures. To date, performance evaluation of NoC designs is largely …

Nitrate sensing by the maize root apex transition zone: a merged transcriptomic and proteomic survey

S Trevisan, A Manoli, L Ravazzolo… - Journal of …, 2015 - academic.oup.com
Nitrate is an essential nutrient for plants, and crops depend on its availability for growth and
development, but its presence in agricultural soils is far from stable. In order to overcome …

First insights into the transcriptome and development of new genomic tools of a widespread circum‐Mediterranean tree species, Pinus halepensis Mill

S Pinosio, SC González‐Martínez… - Molecular Ecology …, 2014 - Wiley Online Library
Abstract Aleppo pine (Pinus halepensis Mill.) is a relevant conifer species for studying
adaptive responses to drought and fire regimes in the Mediterranean region. In this study …

Activation of a gene network in durum wheat roots exposed to cadmium

A Aprile, E Sabella, M Vergine, A Genga, M Siciliano… - BMC plant biology, 2018 - Springer
Background Among cereals, durum wheat (Triticum turgidum L. subsp. durum) accumulates
cadmium (Cd) at higher concentration if grown in Cd-polluted soils. Since cadmium …

HDAC4 regulates satellite cell proliferation and differentiation by targeting P21 and Sharp1 genes

N Marroncelli, M Bianchi, M Bertin, S Consalvi… - Scientific reports, 2018 - nature.com
Skeletal muscle exhibits a high regenerative capacity, mainly due to the ability of satellite
cells to replicate and differentiate in response to appropriate stimuli. Epigenetic control is …