Revisiting an important component of plant genomes: microsatellites

C Gao, X Ren, AS Mason, J Li, W Wang… - Functional Plant …, 2013 - CSIRO Publishing
Microsatellites are some of the most highly variable repetitive DNA tracts in genomes. Few
studies focus on whether the characteristic instability of microsatellites is linked to …

In silicocomparative analysis of SSR markers in plants

FC Victoria, LC da Maia, AC de Oliveira - BMC plant biology, 2011 - Springer
Background The adverse environmental conditions impose extreme limitation to growth and
plant development, restricting the genetic potential and reflecting on plant yield losses. The …

Transcriptome Analysis in Sheepgrass (Leymus chinensis): A Dominant Perennial Grass of the Eurasian Steppe

S Chen, X Huang, X Yan, Y Liang, Y Wang, X Li… - PloS one, 2013 - journals.plos.org
Background Sheepgrass [Leymus chinensis (Trin.) Tzvel.] is an important perennial forage
grass across the Eurasian Steppe and is known for its adaptability to various environmental …

Single-nucleotide polymorphism markers from de-novo assembly of the pomegranate transcriptome reveal germplasm genetic diversity

R Ophir, A Sherman, M Rubinstein, R Eshed… - PLoS …, 2014 - journals.plos.org
Pomegranate is a valuable crop that is grown commercially in many parts of the world. Wild
species have been reported from India, Turkmenistan and Socotra. Pomegranate fruit has a …

Genome Wide Characterization of Short Tandem Repeat Markers in Sweet Orange (Citrus sinensis)

MK Biswas, Q Xu, C Mayer, X Deng - PloS one, 2014 - journals.plos.org
Sweet orange (Citrus sinensis) is one of the major cultivated and most-consumed citrus
species. With the goal of enhancing the genomic resources in citrus, we surveyed …

Genome-wide identification and characterization of functionally relevant microsatellite markers from transcription factor genes of Tea (Camellia sinensis (L.) O. Kuntze …

R Parmar, R Seth, RK Sharma - Scientific Reports, 2022 - nature.com
Tea, being one of the most popular beverages requires large set of molecular markers for
genetic improvement of quality, yield and stress tolerance. Identification of functionally …

[HTML][HTML] Comprehensive identification and characterization of simple sequence repeats based on the whole-genome sequences of 14 forest and fruit trees

X Song, N Li, Y Guo, Y Bai, T Wu, T Yu, S Feng… - Forestry …, 2021 - maxapress.com
Simple sequence repeats (SSRs) are popular and important molecular markers that exist
widely in plants. Here, we conducted a comprehensive identification and comparative …

Genome-wide analysis of tandem repeats in plants and green algae

Z Zhao, C Guo, S Sutharzan, P Li… - G3: Genes …, 2014 - academic.oup.com
Tandem repeats (TRs) extensively exist in the genomes of prokaryotes and eukaryotes.
Based on the sequenced genomes and gene annotations of 31 plant and algal species in …

Assessment of Functional EST‐SSR Markers (Sugarcane) in Cross‐Species Transferability, Genetic Diversity among Poaceae Plants, and Bulk Segregation Analysis

S Ul Haq, P Kumar, RK Singh, KS Verma… - Genetics Research …, 2016 - Wiley Online Library
Expressed sequence tags (ESTs) are important resource for gene discovery, gene
expression and its regulation, molecular marker development, and comparative genomics …

An empirical analysis of mtSSRs: could microsatellite distribution patterns explain the evolution of mitogenomes in plants?

KEJ de Freitas, C Busanello, VE Viana… - Functional & Integrative …, 2022 - Springer
Microsatellites (SSRs) are tandem repeat sequences in eukaryote genomes, including plant
cytoplasmic genomes. The mitochondrial genome (mtDNA) has been shown to vary in size …