Imaging intracellular RNA distribution and dynamics in living cells

S Tyagi - natuRe methods, 2009 - nature.com
Powerful methods now allow the imaging of specific mRNAs in living cells. These methods
enlist fluorescent proteins to illuminate mRNAs, use labeled oligonucleotide probes and …

Microfluidic devices for measuring gene network dynamics in single cells

MR Bennett, J Hasty - Nature Reviews Genetics, 2009 - nature.com
The dynamics governing gene regulation have an important role in determining the
phenotype of a cell or organism. From processing extracellular signals to generating internal …

RNA mango aptamer-fluorophore: a bright, high-affinity complex for RNA labeling and tracking

EV Dolgosheina, SCY Jeng… - ACS chemical …, 2014 - ACS Publications
Because RNA lacks strong intrinsic fluorescence, it has proven challenging to track RNA
molecules in real time. To address this problem and to allow the purification of fluorescently …

Single-molecule analysis of gene expression using two-color RNA labeling in live yeast

S Hocine, P Raymond, D Zenklusen, JA Chao… - Nature …, 2013 - nature.com
Live-cell imaging of mRNA yields important insights into gene expression, but it has
generally been limited to the labeling of one RNA species and has never been used to count …

Inhibition of RNA lariat debranching enzyme suppresses TDP-43 toxicity in ALS disease models

M Armakola, MJ Higgins, MD Figley, SJ Barmada… - Nature …, 2012 - nature.com
Amyotrophic lateral sclerosis (ALS) is a devastating neurodegenerative disease primarily
affecting motor neurons. Mutations in the gene encoding TDP-43 cause some forms of the …

Fluorescent probes for live-cell RNA detection

G Bao, WJ Rhee, A Tsourkas - Annual review of biomedical …, 2009 - annualreviews.org
Commonly used techniques for analyzing gene expression, such as polymerase chain
reaction (PCR), microarrays, and in situ hybridization, have proven invaluable in …

Validating transcripts with probes and imaging technology

S Itzkovitz, A Van Oudenaarden - Nature methods, 2011 - nature.com
High-throughput gene expression screens provide a quantitative picture of the average
expression signature of biological samples. However, the analysis of spatial gene …

Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function

MA Thompson, JM Casolari… - Proceedings of the …, 2010 - National Acad Sciences
Optical imaging of single biomolecules and complexes in living cells provides a useful
window into cellular processes. However, the three-dimensional dynamics of most important …

Localization of mRNAs coding for mitochondrial proteins in the yeast Saccharomyces cerevisiae

N Gadir, L Haim-Vilmovsky, J Kraut-Cohen, JE Gerst - Rna, 2011 - rnajournal.cshlp.org
Targeted mRNA localization is a likely determinant of localized protein synthesis. To
investigate whether mRNAs encoding mitochondrial proteins (mMPs) localize to …

The benefits of cotranslational assembly: a structural perspective

A Schwarz, M Beck - Trends in Cell Biology, 2019 - cell.com
The faithful assembly of protein complexes in space and time is a hallmark of cellular
homeostasis. Complex assembly might be seeded already during translation, if interacting …