Thirty years of resistance: Zig-zag through the plant immune system

BPM Ngou, P Ding, JDG Jones - The Plant Cell, 2022 - academic.oup.com
Understanding the plant immune system is crucial for using genetics to protect crops from
diseases. Plants resist pathogens via a two-tiered innate immune detection-and-response …

Diversification, adaptation, and community assembly of the American oaks (Quercus), a model clade for integrating ecology and evolution

J Cavender‐Bares - New Phytologist, 2019 - Wiley Online Library
Contents Summary 669 I. Model clades for the study and integration of ecology and
evolution 670 II. Oaks: an important model clade 671 III. Insights from the history of the …

Dual domestications and origin of traits in grapevine evolution

Y Dong, S Duan, Q Xia, Z Liang, X Dong, K Margaryan… - Science, 2023 - science.org
We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild
accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape …

BUSCO: assessing genome assembly and annotation completeness

M Seppey, M Manni, EM Zdobnov - Gene prediction: methods and …, 2019 - Springer
Genomics drives the current progress in molecular biology, generating unprecedented
volumes of data. The scientific value of these sequences depends on the ability to evaluate …

[HTML][HTML] Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere

BF Zhou, S Yuan, AA Crowl, YY Liang, Y Shi… - Nature …, 2022 - nature.com
Northern Hemisphere forests changed drastically in the early Eocene with the diversification
of the oak family (Fagaceae). Cooling climates over the next 20 million years fostered the …

Genome-wide analyses of introgression between two sympatric Asian oak species

R Fu, Y Zhu, Y Liu, Y Feng, RS Lu, Y Li, P Li… - Nature Ecology & …, 2022 - nature.com
Introgression can be an important source of new alleles for adaption under rapidly changing
environments, perhaps even more important than standing variation. Though introgression …

Genomic landscape of the global oak phylogeny

AL Hipp, PS Manos, M Hahn, M Avishai… - New …, 2020 - Wiley Online Library
The tree of life is highly reticulate, with the history of population divergence emerging from
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …

[HTML][HTML] The genome evolution and domestication of tropical fruit mango

P Wang, Y Luo, J Huang, S Gao, G Zhu, Z Dang, J Gai… - Genome biology, 2020 - Springer
Background Mango is one of the world's most important tropical fruits. It belongs to the family
Anacardiaceae, which includes several other economically important species, notably …

[HTML][HTML] Modern strategies to assess and breed forest tree adaptation to changing climate

AJ Cortés, M Restrepo-Montoya… - Frontiers in Plant …, 2020 - frontiersin.org
Studying the genetics of adaptation to new environments in ecologically and industrially
important tree species is currently a major research line in the fields of plant science and …

[HTML][HTML] The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts

T Wan, Z Liu, IJ Leitch, H Xin, G Maggs-Kölling… - Nature …, 2021 - nature.com
The gymnosperm Welwitschia mirabilis belongs to the ancient, enigmatic gnetophyte
lineage. It is a unique desert plant with extreme longevity and two ever-elongating leaves …