Detection of SARS-CoV-2 and its mutated variants via CRISPR-Cas13-based transcription amplification
Y Wang, Y Zhang, J Chen, M Wang, T Zhang… - Analytical …, 2021 - ACS Publications
The outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) caused a
global health emergency, and its gene mutation and evolution further posed uncertainty of …
global health emergency, and its gene mutation and evolution further posed uncertainty of …
Plasma-derived HIV-1 virions contain considerable levels of defective genomes
K Fisher, XQ Wang, A Lee, V Morcilla… - Journal of …, 2022 - Am Soc Microbiol
Genetically-characterizing full-length HIV-1 RNA is critical for identifying genetically-intact
genomes and for comparing these RNA genomes to proviral DNA. We have developed a …
genomes and for comparing these RNA genomes to proviral DNA. We have developed a …
Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon
A significant portion of genes in vertebrate genomes belongs to multigene families, with
each family containing several gene copies whose presence/absence, as well as isoform …
each family containing several gene copies whose presence/absence, as well as isoform …
Discrete measurements of RNA polymerase and reverse transcriptase fidelity reveal evolutionary tuning
V Potapov, S Krudup, S Maguire, I Unlu, S Guan… - RNA, 2024 - rnajournal.cshlp.org
Direct methods for determining the fidelity of DNA polymerases are robust, with relatively
little sample manipulation before sequencing. In contrast, methods for measuring RNA …
little sample manipulation before sequencing. In contrast, methods for measuring RNA …
Early sample tagging and pooling enables simultaneous SARS-CoV-2 detection and variant sequencing
A Chappleboim, D Joseph-Strauss, A Rahat… - Science Translational …, 2021 - science.org
Most severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) diagnostic tests have
relied on RNA extraction followed by reverse transcription quantitative polymerase chain …
relied on RNA extraction followed by reverse transcription quantitative polymerase chain …
Rare taxa exhibit disproportionate cell-level metabolic activity in enriched anaerobic digestion microbial communities
Microbial communities are composed of populations with vastly different abundances and
levels of metabolic and replicative activity, ranging from actively metabolizing and dividing to …
levels of metabolic and replicative activity, ranging from actively metabolizing and dividing to …
Ampliconic genes on the great ape Y chromosomes: rapid evolution of copy number but conservation of expression levels
Multicopy ampliconic gene families on the Y chromosome play an important role in
spermatogenesis. Thus, studying their genetic variation in endangered great ape species is …
spermatogenesis. Thus, studying their genetic variation in endangered great ape species is …
Cryo‐X‐Ray Phase Contrast Imaging Enables Combined 3D Structural Quantification and Nucleic Acid Analysis of Myocardial Biopsies
Snap‐frozen biopsies serve as a valuable clinical resource of archival material for disease
research, as they enable a comprehensive array of downstream analyses to be performed …
research, as they enable a comprehensive array of downstream analyses to be performed …
Re-analysis of mobile mRNA datasets highlights challenges in the detection of mobile transcripts from short-read RNA-Seq data
P Paajanen, M Tomkins, F Hoerbst, R Veevers… - bioRxiv, 2024 - biorxiv.org
Short-read RNA-Seq analyses of grafted plants have led to the proposal that large numbers
of mRNAs move over long distances between plant tissues, acting as potential signals. The …
of mRNAs move over long distances between plant tissues, acting as potential signals. The …
Relatively semi-conservative replication and a folded slippage model for short tandem repeats
H Zhang, D Li, X Zhao, S Pan, X Wu, S Peng, H Huang… - BMC genomics, 2020 - Springer
Background The ubiquitous presence of short tandem repeats (STRs) in virtually all
genomes implicates their functional relevance, while a widely-accepted definition of STR is …
genomes implicates their functional relevance, while a widely-accepted definition of STR is …