High-performance computing in undergraduate education at primarily undergraduate institutions in Wisconsin: Progress, challenges, and opportunities

J Hebert, R Hratisch, R Gomes, W Kunkel… - Education and …, 2024 - Springer
High-performance computing (HPC) has become a strategic resource that drives innovation
and economic growth. In addition, it is important to educate a workforce with advanced …

Efficiency of homology modeling assisted molecular docking in G-protein coupled receptors

SS Bhunia, AK Saxena - Current Topics in Medicinal Chemistry, 2021 - ingentaconnect.com
Background: Molecular docking is in regular practice to assess ligand affinity on a target
protein crystal structure. In the absence of protein crystal structure, the homology modeling …

Modes of technology integration in chemistry teaching: theory and practice

I Aroch, D Katchevich, R Blonder - Chemistry Education Research and …, 2024 - pubs.rsc.org
The rise of digital technologies since the second half of the 20th century has transformed
every aspect of our lives and has had an ongoing effect even on one of the most …

Inter-institutional Resource Sharing in Undergraduate HPC Education: Interviews with University Administrators

A Ghosh, W Kunkel, A Varghese, Y Ma… - Proceedings of the 54th …, 2023 - dl.acm.org
High performance computing (HPC), typically used only in research until recently, is being
integrated more into undergraduate curricula across disciplines. HPC resources are …

Using PyMOL to explore the effects of ph on noncovalent interactions between immunoglobulin g and protein A: A guided‐inquiry biochemistry activity

ZD Roche Allred, H Tai, SL Bretz… - … and Molecular Biology …, 2017 - Wiley Online Library
Students' understandings of foundational concepts such as noncovalent interactions, pH
and pKa are crucial for success in undergraduate biochemistry courses. We developed a …

Facilitating Students' Interaction with Real Gas Properties Using a Discovery-Based Approach and Molecular Dynamics Simulations

C Sweet, O Akinfenwa, JJ Foley IV - Journal of Chemical …, 2018 - ACS Publications
We present an interactive discovery-based approach to studying the properties of real gases
using simple, yet realistic, molecular dynamics software. Use of this approach opens up a …

Writing a literature review as a class project in an upper‐level undergraduate biochemistry course

S Hati, S Bhattacharyya - Biochemistry and Molecular Biology …, 2024 - Wiley Online Library
A literature review is an important part of conducting academic research. Knowing how to
conduct a literature search and write a high‐quality literature review is a valuable skill …

Green Fluorescent Protein-Focused Bioinformatics Laboratory Experiment Suitable for Undergraduates in Biochemistry Courses

L Rowe - Journal of Chemical Education, 2017 - ACS Publications
An introductory bioinformatics laboratory experiment focused on protein analysis has been
developed that is suitable for undergraduate students in introductory biochemistry courses …

Active Learning Module for Protein Structure Analysis Using Novel Enzymes

JI Kelz, GR Takahashi, F Safizadeh… - The …, 2022 - meridian.allenpress.com
ABSTRACT A major challenge for science educators is teaching foundational concepts
while introducing their students to current research. Here we describe an active learning …

Integrating research into the curriculum: A low-cost strategy for promoting undergraduate research

S Hati, S Bhattacharyya - Best Practices for Supporting and …, 2018 - ACS Publications
Undergraduate research provides students with hands-on training where they can apply
classroom learning to solve original research problems and develop new skills. It not only …