Clinical metagenomics

CY Chiu, SA Miller - Nature Reviews Genetics, 2019 - nature.com
Clinical metagenomic next-generation sequencing (mNGS), the comprehensive analysis of
microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly …

Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory

DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …

[HTML][HTML] Pleural effusion in adults—etiology, diagnosis, and treatment

B Jany, T Welte - Deutsches Ärzteblatt International, 2019 - ncbi.nlm.nih.gov
Background Pleural effusion is common in routine medical practice and can be due to many
different underlying diseases. Precise differential diagnostic categorization is essential, as …

[HTML][HTML] Bacterial infections in cirrhosis: a position statement based on the EASL Special Conference 2013

R Jalan, J Fernandez, R Wiest, B Schnabl… - Journal of …, 2014 - Elsevier
Bacterial infections are very common and represent one of the most important reasons of
progression of liver failure, development of liver-related complications, and mortality in …

Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review

P Craw, W Balachandran - Lab on a Chip, 2012 - pubs.rsc.org
Nucleic Acid Testing (NAT) promises rapid, sensitive and specific diagnosis of infectious,
inherited and genetic disease. The next generation of diagnostic devices will interrogate the …

Whole genome sequencing in clinical and public health microbiology

JC Kwong, N McCallum, V Sintchenko, BP Howden - Pathology, 2015 - Elsevier
Genomics and whole genome sequencing (WGS) have the capacity to greatly enhance
knowledge and understanding of infectious diseases and clinical microbiology. The growth …

Bacterial keratitis: identifying the areas of clinical uncertainty

S Tuft, TF Somerville, JPO Li, T Neal, S De… - Progress in retinal and …, 2022 - Elsevier
Bacterial keratitis is a common corneal infection that is treated with topical antimicrobials. By
the time of presentation there may already be severe visual loss from corneal ulceration and …

[HTML][HTML] MALDI-TOF mass spectrometry technology for detecting biomarkers of antimicrobial resistance: current achievements and future perspectives

G Vrioni, C Tsiamis, G Oikonomidis… - Annals of …, 2018 - ncbi.nlm.nih.gov
The laboratory diagnosis of infections is based on pathogen identification and antimicrobial
susceptibility determination. The gold standard of cultivation, isolation and susceptibility …

Proteome-based bacterial identification using matrix-assisted laser desorption ionization–time of flight mass spectrometry (MALDI-TOF MS): A revolutionary shift in …

F Nomura - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2015 - Elsevier
Rapid and accurate identification of microorganisms, a prerequisite for appropriate patient
care and infection control, is a critical function of any clinical microbiology laboratory. Matrix …

Polyethersulfone-based microfluidic device integrated with DNA extraction on paper and recombinase polymerase amplification for the detection of Salmonella …

Y Chen, Y Hu, X Lu - ACS sensors, 2023 - ACS Publications
Rising consumption, large-scale production, and widespread distribution have been
accompanied by an increase in the number of Salmonella infections reported to implicate …