Tissue clearing to examine tumour complexity in three dimensions

J Almagro, HA Messal, M Zaw Thin… - Nature Reviews …, 2021 - nature.com
The visualization of whole organs and organisms through tissue clearing and fluorescence
volumetric imaging has revolutionized the way we look at biological samples. Its application …

[HTML][HTML] Mapping the fine-scale organization and plasticity of the brain vasculature

C Kirst, S Skriabine, A Vieites-Prado, T Topilko… - Cell, 2020 - cell.com
The cerebral vasculature is a dense network of arteries, capillaries, and veins. Quantifying
variations of the vascular organization across individuals, brain regions, or disease models …

Machine learning analysis of whole mouse brain vasculature

MI Todorov, JC Paetzold, O Schoppe, G Tetteh, S Shit… - Nature …, 2020 - nature.com
Tissue clearing methods enable the imaging of biological specimens without sectioning.
However, reliable and scalable analysis of large imaging datasets in three dimensions …

Deep tissue imaging: a review from a preclinical cancer research perspective

A Feuchtinger, A Walch, M Dobosz - Histochemistry and cell biology, 2016 - Springer
This review delves into the rapidly evolving field of deep tissue imaging at cellular
resolution, reviewing popular tissue clearing and staining methods in combination with light …

Local blood coagulation drives cancer cell arrest and brain metastasis in a mouse model

MJ Feinauer, SW Schneider… - Blood, The Journal …, 2021 - ashpublications.org
Clinically relevant brain metastases (BMs) frequently form in cancer patients, with limited
options for effective treatment. Circulating cancer cells must first permanently arrest in brain …

In vivo nanoparticle imaging of innate immune cells can serve as a marker of disease severity in a model of multiple sclerosis

K Kirschbaum, JK Sonner, MW Zeller… - Proceedings of the …, 2016 - National Acad Sciences
Innate immune cells play a key role in the pathogenesis of multiple sclerosis and
experimental autoimmune encephalomyelitis (EAE). Current clinical imaging is restricted to …

A Cellular Ground Truth to Develop MRI Signatures in Glioma Models by Correlative Light Sheet Microscopy and Atlas-Based Coregistration

K Schregel, L Heinz, J Hunger, C Pan… - Journal of …, 2023 - Soc Neuroscience
Glioblastoma is the most common malignant primary brain tumor with poor overall survival.
Magnetic resonance imaging (MRI) is the main imaging modality for glioblastoma but has …

[HTML][HTML] Monitoring innate immune cell dynamics in the glioma microenvironment by magnetic resonance imaging and multiphoton microscopy (MR-MPM)

K Karimian-Jazi, P Münch, A Alexander, M Fischer… - Theranostics, 2020 - ncbi.nlm.nih.gov
Rationale: Glioblastoma is the most frequent, primary brain tumor that is characterized by a
highly immunosuppressive tumor microenvironment (TME). The TME plays a key role for …

[HTML][HTML] Glioblastoma multiforme restructures the topological connectivity of cerebrovascular networks

A Hahn, J Bode, T Krüwel, G Solecki, S Heiland… - Scientific reports, 2019 - nature.com
Glioblastoma multiforme alters healthy tissue vasculature by inducing angiogenesis and
vascular remodeling. To fully comprehend the structural and functional properties of the …

Multimodal 3D Mouse Brain Atlas Framework with the Skull-Derived Coordinate System

J Perens, CG Salinas, U Roostalu, JL Skytte… - Neuroinformatics, 2023 - Springer
Magnetic resonance imaging (MRI) and light-sheet fluorescence microscopy (LSFM) are
technologies that enable non-disruptive 3-dimensional imaging of whole mouse brains. A …