Alternative splicing regulatory networks: functions, mechanisms, and evolution

J Ule, BJ Blencowe - Molecular cell, 2019 - cell.com
High-throughput sequencing-based methods and their applications in the study of
transcriptomes have revolutionized our understanding of alternative splicing. Networks of …

Targeting mRNA processing as an anticancer strategy

J Desterro, P Bak-Gordon… - Nature Reviews Drug …, 2020 - nature.com
Discoveries in the past decade have highlighted the potential of mRNA as a therapeutic
target for cancer. Specifically, RNA sequencing revealed that, in addition to gene mutations …

Transcription factors interact with RNA to regulate genes

O Oksuz, JE Henninger, R Warneford-Thomson… - Molecular cell, 2023 - cell.com
Transcription factors (TFs) orchestrate the gene expression programs that define each cell's
identity. The canonical TF accomplishes this with two domains, one that binds specific DNA …

PRMT inhibition induces a viral mimicry response in triple-negative breast cancer

Q Wu, DY Nie, W Ba-Alawi, YS Ji, ZW Zhang… - Nature chemical …, 2022 - nature.com
Triple-negative breast cancer (TNBC) is the most aggressive breast cancer subtype with the
worst prognosis and few effective therapies. Here we identified MS023, an inhibitor of type I …

Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues

A Reyes, W Huber - Nucleic acids research, 2018 - academic.oup.com
Most human genes generate multiple transcript isoforms. The differential expression of these
isoforms can help specify cell types. Diverse transcript isoforms arise from the use of …

[HTML][HTML] SARS-CoV-2 nucleocapsid protein binds host mRNAs and attenuates stress granules to impair host stress response

S Nabeel-Shah, H Lee, N Ahmed, GL Burke… - IScience, 2022 - cell.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) nucleocapsid (N) protein is
essential for viral replication, making it a promising target for antiviral drug and vaccine …

Epithelial–mesenchymal-transition-inducing transcription factors: new targets for tackling chemoresistance in cancer?

J van Staalduinen, D Baker, P Ten Dijke, H van Dam - Oncogene, 2018 - nature.com
Chemoresistance remains a major complication of cancer treatments. Recent data provide
strong evidence that chemoresistance is linked to epithelial–mesenchymal transition (EMT) …

[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

Splicing-associated chromatin signatures: a combinatorial and position-dependent role for histone marks in splicing definition

E Agirre, AJ Oldfield, N Bellora, A Segelle… - Nature …, 2021 - nature.com
Alternative splicing relies on the combinatorial recruitment of splicing regulators to specific
RNA binding sites. Chromatin has been shown to impact this recruitment. However, a limited …

Regulation of alternative polyadenylation by the C2H2-zinc-finger protein Sp1

J Song, S Nabeel-Shah, S Pu, H Lee, U Braunschweig… - Molecular Cell, 2022 - cell.com
Alternative polyadenylation (APA) enhances gene regulatory potential by increasing the
diversity of mRNA transcripts. 3′ UTR shortening through APA correlates with enhanced …