Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

Need for speed: manipulating plant growth to accelerate breeding cycles

M Bhatta, P Sandro, MR Smith, O Delaney… - Current Opinion in Plant …, 2021 - Elsevier
To develop more productive and resilient crops that are capable of feeding 10 billion people
by 2050, we must accelerate the rate of genetic improvement in plant breeding programs …

Multi-trait, multi-environment deep learning modeling for genomic-enabled prediction of plant traits

OA Montesinos-López… - G3: Genes, genomes …, 2018 - academic.oup.com
Multi-trait and multi-environment data are common in animal and plant breeding programs.
However, what is lacking are more powerful statistical models that can exploit the correlation …

Resource allocation optimization with multi-trait genomic prediction for bread wheat (Triticum aestivum L.) baking quality

B Lado, D Vázquez, M Quincke, P Silva… - Theoretical and Applied …, 2018 - Springer
Abstract Key Message Multi-trait genomic prediction models are useful to allocate available
resources in breeding programs by targeted phenotyping of correlated traits when predicting …

Multi-trait Genomic Prediction Model Increased the Predictive Ability for Agronomic and Malting Quality Traits in Barley (Hordeum vulgare L.)

M Bhatta, L Gutierrez, L Cammarota… - G3: Genes …, 2020 - academic.oup.com
Plant breeders regularly evaluate multiple traits across multiple environments, which opens
an avenue for using multiple traits in genomic prediction models. We assessed the potential …

Multi-trait multi-environment genomic prediction of agronomic traits in advanced breeding lines of winter wheat

HS Gill, J Halder, J Zhang, NK Brar, TS Rai… - Frontiers in Plant …, 2021 - frontiersin.org
Genomic prediction is a promising approach for accelerating the genetic gain of complex
traits in wheat breeding. However, increasing the prediction accuracy (PA) of genomic …

A genomic Bayesian multi-trait and multi-environment model

OA Montesinos-López… - G3: Genes …, 2016 - academic.oup.com
When information on multiple genotypes evaluated in multiple environments is recorded, a
multi-environment single trait model for assessing genotype× environment interaction (G× E) …

KAML: improving genomic prediction accuracy of complex traits using machine learning determined parameters

L Yin, H Zhang, X Zhou, X Yuan, S Zhao, X Li, X Liu - Genome biology, 2020 - Springer
Advances in high-throughput sequencing technologies have reduced the cost of genotyping
dramatically and led to genomic prediction being widely used in animal and plant breeding …

New deep learning genomic-based prediction model for multiple traits with binary, ordinal, and continuous phenotypes

OA Montesinos-López, J Martín-Vallejo… - G3: Genes, genomes …, 2019 - academic.oup.com
Multiple-trait experiments with mixed phenotypes (binary, ordinal and continuous) are not
rare in animal and plant breeding programs. However, there is a lack of statistical models …

Genomic selection for grain yield and quality traits in durum wheat

JK Haile, A N'Diaye, F Clarke, J Clarke, R Knox… - Molecular …, 2018 - Springer
The prediction accuracies of genomic selection depend on several factors, including the
genetic architecture of target traits, the number of traits considered at a given time, and the …