Origin of animal multicellularity: precursors, causes, consequences—the choanoflagellate/sponge transition, neurogenesis and the Cambrian explosion

T Cavalier-Smith - … Transactions of the Royal Society B …, 2017 - royalsocietypublishing.org
Evolving multicellularity is easy, especially in phototrophs and osmotrophs whose multicells
feed like unicells. Evolving animals was much harder and unique; probably only one …

Improved modeling of compositional heterogeneity supports sponges as sister to all other animals

R Feuda, M Dohrmann, W Pett, H Philippe… - Current Biology, 2017 - cell.com
The relationships at the root of the animal tree have proven difficult to resolve, with the
current debate focusing on whether sponges (phylum Porifera) or comb jellies (phylum …

Genomic data do not support comb jellies as the sister group to all other animals

D Pisani, W Pett, M Dohrmann… - Proceedings of the …, 2015 - National Acad Sciences
Understanding how complex traits, such as epithelia, nervous systems, muscles, or guts,
originated depends on a well-supported hypothesis about the phylogenetic relationships …

Myosin heavy chain as a novel key modulator of striated muscle resting state

CTA Lewis, J Ochala - Physiology, 2023 - journals.physiology.org
After years of intense research using structural, biological, and biochemical experimental
procedures, it is clear that myosin molecules are essential for striated muscle contraction …

OMA standalone: orthology inference among public and custom genomes and transcriptomes

AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek… - Genome …, 2019 - genome.cshlp.org
Genomes and transcriptomes are now typically sequenced by individual laboratories but
analyzing them often remains challenging. One essential step in many analyses lies in …

The last common ancestor of most bilaterian animals possessed at least nine opsins

MD Ramirez, AN Pairett, MS Pankey… - Genome biology and …, 2016 - academic.oup.com
The opsin gene family encodes key proteins animals use to sense light and has expanded
dramatically as it originated early in animal evolution. Understanding the origins of opsin …

Interacting-heads motif has been conserved as a mechanism of myosin II inhibition since before the origin of animals

KH Lee, G Sulbarán, S Yang, JY Mun… - Proceedings of the …, 2018 - National Acad Sciences
Electron microscope studies have shown that the switched-off state of myosin II in muscle
involves intramolecular interaction between the two heads of myosin and between one head …

Phylogenomic analyses recover a clade of large-bodied decapodiform cephalopods

FE Anderson, AR Lindgren - Molecular Phylogenetics and Evolution, 2021 - Elsevier
Phylogenetic relationships among the squids and cuttlefishes (Cephalopoda:
Decapodiformes) have resisted clarification for decades, despite multiple analyses of …

Cambrian sessile, suspension feeding stem-group ctenophores and evolution of the comb jelly body plan

Y Zhao, J Vinther, LA Parry, F Wei, E Green, D Pisani… - Current Biology, 2019 - cell.com
The origin of ctenophores (comb jellies) is obscured by their controversial phylogenetic
position, with recent phylogenomic analyses resolving either sponges or ctenophores as the …

Systematic bias and the phylogeny of Coleoptera—A response to Cai et al.(2022) following the responses to Cai et al.(2020)

BE Boudinot, M Fikáček, ZE Lieberman… - Systematic …, 2023 - Wiley Online Library
Systematic bias is one of the major phylogenetic issues arising over the last two decades.
Using methods designed to reduce compositional and rate heterogeneity, hence systematic …