[HTML][HTML] From whole-mount to single-cell spatial assessment of gene expression in 3D

LN Waylen, HT Nim, LG Martelotto… - Communications …, 2020 - nature.com
Unravelling spatio-temporal patterns of gene expression is crucial to understanding core
biological principles from embryogenesis to disease. Here we review emerging …

Xenopus research: metamorphosed by genetics and genomics

RM Harland, RM Grainger - Trends in Genetics, 2011 - cell.com
Research using Xenopus takes advantage of large, abundant eggs and readily manipulated
embryos in addition to conserved cellular, developmental and genomic organization with …

Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms

BI Arshinoff, GA Cary, K Karimi, S Foley… - Nucleic acids …, 2022 - academic.oup.com
Abstract Echinobase (www. echinobase. org) is a third generation web resource supporting
genomic research on echinoderms. The new version was built by cloning the mature …

[HTML][HTML] On the relationship of protein and mRNA dynamics in vertebrate embryonic development

L Peshkin, M Wühr, E Pearl, W Haas, RM Freeman… - Developmental cell, 2015 - cell.com
A biochemical explanation of development from the fertilized egg to the adult requires an
understanding of the proteins and RNAs expressed over time during embryogenesis. We …

[HTML][HTML] On the reproducibility of science: unique identification of research resources in the biomedical literature

NA Vasilevsky, MH Brush, H Paddock, L Ponting… - PeerJ, 2013 - peerj.com
On the reproducibility of science: unique identification of research resources in the
biomedical literature [PeerJ] Related research Download Share Twitter Facebook Email …

[HTML][HTML] Measuring absolute RNA copy numbers at high temporal resolution reveals transcriptome kinetics in development

NDL Owens, IL Blitz, MA Lane, I Patrushev, JD Overton… - Cell reports, 2016 - cell.com
Transcript regulation is essential for cell function, and misregulation can lead to disease.
Despite technologies to survey the transcriptome, we lack a comprehensive understanding …

genenames. org: the HGNC resources in 2011

RL Seal, SM Gordon, MJ Lush, MW Wright… - Nucleic acids …, 2010 - academic.oup.com
Abstract The HUGO Gene Nomenclature Committee (HGNC) aims to assign a unique gene
symbol and name to every human gene. The HGNC database currently contains almost 30 …

Transmembrane voltage potential controls embryonic eye patterning in Xenopus laevis

VP Pai, S Aw, T Shomrat, JM Lemire… - Development, 2012 - journals.biologists.com
Uncovering the molecular mechanisms of eye development is crucial for understanding the
embryonic morphogenesis of complex structures, as well as for the establishment of novel …

Homologous gene regulatory networks control development of apical organs and brains in Bilateria

R Feuda, IS Peter - Science Advances, 2022 - science.org
Apical organs are relatively simple larval nervous systems. The extent to which apical
organs are evolutionarily related to the more complex nervous systems of other animals …

Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis

EJ Gardner, ZF Nizami, CC Talbot… - Genes & …, 2012 - genesdev.cshlp.org
To compare nuclear and cytoplasmic RNA from a single cell type, free of cross-
contamination, we studied the oocyte of the frog Xenopus tropicalis, a giant cell with an …