[HTML][HTML] Conceptual and empirical bridges between micro-and macroevolution

J Rolland, LF Henao-Diaz, M Doebeli… - Nature Ecology & …, 2023 - nature.com
Explaining broad molecular, phenotypic and species biodiversity patterns necessitates a
unifying framework spanning multiple evolutionary scales. Here we argue that although …

The role of the uplift of the Qinghai‐Tibetan Plateau for the evolution of Tibetan biotas

A Favre, M Päckert, SU Pauls, SC Jähnig… - Biological …, 2015 - Wiley Online Library
Biodiversity is unevenly distributed on Earth and hotspots of biodiversity are often
associated with areas that have undergone orogenic activity during recent geological history …

[HTML][HTML] Global minimum estimates of children affected by COVID-19-associated orphanhood and deaths of caregivers: a modelling study

SD Hillis, HJT Unwin, Y Chen, L Cluver, L Sherr… - The Lancet, 2021 - thelancet.com
Background The COVID-19 pandemic priorities have focused on prevention, detection, and
response. Beyond morbidity and mortality, pandemics carry secondary impacts, such as …

[HTML][HTML] Extant timetrees are consistent with a myriad of diversification histories

S Louca, MW Pennell - Nature, 2020 - nature.com
Time-calibrated phylogenies of extant species (referred to here as 'extant timetrees') are
widely used for estimating diversification dynamics. However, there has been considerable …

phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)

LJ Revell - PeerJ, 2024 - peerj.com
Phylogenetic comparative methods comprise the general endeavor of using an estimated
phylogenetic tree (or set of trees) to make secondary inferences: about trait evolution …

Tree of life reveals clock-like speciation and diversification

SB Hedges, J Marin, M Suleski… - … biology and evolution, 2015 - academic.oup.com
Genomic data are rapidly resolving the tree of living species calibrated to time, the timetree
of life, which will provide a framework for research in diverse fields of science. Previous …

[图书][B] Bayesian evolutionary analysis with BEAST

AJ Drummond, RR Bouckaert - 2015 - books.google.com
What are the models used in phylogenetic analysis and what exactly is involved in Bayesian
evolutionary analysis using Markov chain Monte Carlo (MCMC) methods? How can you …

Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets

T Fujisawa, TG Barraclough - Systematic biology, 2013 - academic.oup.com
DNA barcoding-type studies assemble single-locus data from large samples of individuals
and species, and have provided new kinds of data for evolutionary surveys of diversity. An …

Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees

DL Rabosky - PloS one, 2014 - journals.plos.org
A number of methods have been developed to infer differential rates of species
diversification through time and among clades using time-calibrated phylogenetic trees …

The fossilized birth–death process for coherent calibration of divergence-time estimates

TA Heath, JP Huelsenbeck… - Proceedings of the …, 2014 - National Acad Sciences
Time-calibrated species phylogenies are critical for addressing a wide range of questions in
evolutionary biology, such as those that elucidate historical biogeography or uncover …