TRIM7 ubiquitinates SARS-CoV-2 membrane protein to limit apoptosis and viral replication

M Gonzalez-Orozco, H Tseng, A Hage, H Xia… - Nature …, 2024 - nature.com
SARS-CoV-2 is a highly transmissible virus that causes COVID-19 disease. Mechanisms of
viral pathogenesis include excessive inflammation and viral-induced cell death, resulting in …

Ebola virus VP35 interacts non-covalently with ubiquitin chains to promote viral replication

CA Rodríguez-Salazar, S van Tol, O Mailhot… - PLoS …, 2024 - journals.plos.org
Ebolavirus (EBOV) belongs to a family of highly pathogenic viruses that cause severe
hemorrhagic fever in humans. EBOV replication requires the activity of the viral polymerase …

[HTML][HTML] Ebola virus VP35 interacts non-covalently with ubiquitin chains to promote viral replication creating new therapeutic opportunities

CA Rodríguez-Salazar, S van Tol, O Mailhot, G Galdino… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Ebolavirus (EBOV) belongs to a family of highly pathogenic viruses that cause severe
hemorrhagic fever in humans. EBOV replication requires the activity of the viral polymerase …

Understanding and Predicting Ligand Efficacy in the μ-Opioid Receptor through Quantitative Dynamical Analysis of Complex Structures

GT Galdino, O Mailhot… - Journal of Chemical …, 2024 - ACS Publications
The μ-opioid receptor (MOR) is a G-protein coupled receptor involved in nociception and the
primary target of opioid drugs. Understanding the relationships among the ligand structure …

ProCogGraph: a graph-based mapping of cognate ligand domain interactions

M Crown, M Bashton - Bioinformatics Advances, 2024 - academic.oup.com
Motivation Mappings of domain-cognate ligand interactions can enhance our understanding
of the core concepts of evolution and be used to aid docking and protein design. Since the …

Comprehensive Analysis of SARS-CoV-2 Spike Evolution: Epitope Classification and Immune Escape Prediction

NFB Teruel, M Crown, R Rajsbaum, M Bashton… - bioRxiv, 2024 - biorxiv.org
The evolution of SARS-CoV-2, the virus responsible for the COVID-19 pandemic, has
produced unprecedented numbers of structures of the Spike protein. This study presents a …

How do we respond to the next SARS CoV epidemic/pandemic? A bioinformatics approach with the promise of preventing or reducing the severity of future SARS CoV …

B Geoffrey AS, J Gracia - bioRxiv, 2024 - biorxiv.org
In this work, we develop a Bayesian weighted scheme to generate evolutionary lineages of
a particular viral protein sequence of interest and through a process of clustering and …

Molecular Glue-Design-Evaluator (MOLDE): An Advanced Method for In-Silico Molecular Glue Design

B Geoffrey AS, D Agrawal, N Kulkarni, M Gunasekaran - bioRxiv, 2024 - biorxiv.org
Protein function modulation using small molecule binding is an important therapeutic
strategy for many diseases. However, many proteins remain undruggable due to lack of …