X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in …

CD Putnam, M Hammel, GL Hura… - Quarterly reviews of …, 2007 - cambridge.org
Crystallography supplies unparalleled detail on structural information critical for mechanistic
analyses; however, it is restricted to describing low energy conformations of …

Coarse-grained models for proteins

V Tozzini - Current opinion in structural biology, 2005 - Elsevier
Coarse-grained models for proteins and biomolecular aggregates have recently enjoyed
renewed interest. Coarse-grained representations combined with enhanced computer …

[图书][B] Three-dimensional electron microscopy of macromolecular assemblies: visualization of biological molecules in their native state

J Frank - 2006 - books.google.com
Cryoelectron microscopy of biological molecules is among the hottest growth areas in
biophysics and structural biology at present, and Frank is arguably the most distinguished …

[图书][B] Coarse-graining of condensed phase and biomolecular systems

GA Voth - 2008 - taylorfrancis.com
Exploring recent developments in the field, Coarse-Graining of Condensed Phase and
Biomolecular Systems examines systematic ways of constructing coarse-grained …

[HTML][HTML] Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

J Ma - Structure, 2005 - cell.com
Various types of large-amplitude molecular deformation are ubiquitously involved in the
functions of biological macromolecules, especially supramolecular complexes. They can be …

iMod: multipurpose normal mode analysis in internal coordinates

JR Lopéz-Blanco, JI Garzón, P Chacón - Bioinformatics, 2011 - academic.oup.com
Motivation: Dynamic simulations of systems with biologically relevant sizes and time scales
are critical for understanding macromolecular functioning. Coarse-grained representations …

Simulating movement of tRNA into the ribosome during decoding

KY Sanbonmatsu, S Joseph… - Proceedings of the …, 2005 - National Acad Sciences
Decoding is the key step during protein synthesis that enables information transfer from RNA
to protein, a process critical for the survival of all organisms. We have used large-scale …

A structural perspective on protein–protein interactions

RB Russell, F Alber, P Aloy, FP Davis, D Korkin… - Current opinion in …, 2004 - Elsevier
Structures of macromolecular complexes are necessary for a mechanistic description of
biochemical and cellular processes. They can be solved by experimental methods, such as …

A global model of tropospheric chlorine chemistry: Organic versus inorganic sources and impact on methane oxidation

R Hossaini, MP Chipperfield… - Journal of …, 2016 - Wiley Online Library
Chlorine atoms (Cl) are highly reactive toward hydrocarbons in the Earth's troposphere,
including the greenhouse gas methane (CH4). However, the regional and global CH4 sink …

Symmetry, form, and shape: guiding principles for robustness in macromolecular machines

F Tama, CL Brooks III - Annu. Rev. Biophys. Biomol. Struct., 2006 - annualreviews.org
Computational studies of large macromolecular assemblages have come a long way during
the past 10 years. With the explosion of computer power and parallel computing, timescales …