Transcriptomics for clinical and experimental biology research: hang on a seq

T Stokes, HH Cen, P Kapranov, IJ Gallagher… - Advanced …, 2023 - Wiley Online Library
Sequencing the human genome empowers translational medicine, facilitating transcriptome‐
wide molecular diagnosis, pathway biology, and drug repositioning. Initially, microarrays are …

Setting the clock of neural progenitor cells during mammalian corticogenesis

B Koo, KH Lee, G Ming, KJ Yoon, H Song - Seminars in cell & …, 2023 - Elsevier
Radial glial cells (RGCs) as primary neural stem cells in the developing mammalian cortex
give rise to diverse types of neurons and glial cells according to sophisticated …

Epitranscriptomic regulation of cortical neurogenesis via Mettl8-dependent mitochondrial tRNA m3C modification

F Zhang, K Yoon, DY Zhang, NS Kim, G Ming, H Song - Cell Stem Cell, 2023 - cell.com
Increasing evidence implicates the critical roles of various epitranscriptomic RNA
modifications in different biological processes. Methyltransferase METTL8 installs 3 …

Mapping medically relevant RNA isoform diversity in the aged human frontal cortex with deep long-read RNA-seq

B Aguzzoli Heberle, JA Brandon, ML Page… - Nature …, 2024 - nature.com
Determining whether the RNA isoforms from medically relevant genes have distinct
functions could facilitate direct targeting of RNA isoforms for disease treatment. Here, as a …

[HTML][HTML] Using deep long-read RNAseq in Alzheimer's disease brain to assess medical relevance of RNA isoform diversity

BA Heberle, JA Brandon, ML Page, KA Nations… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Due to alternative splicing, human protein-coding genes average over eight RNA isoforms,
resulting in nearly four distinct protein coding sequences per gene. Long-read RNAseq …

Nanopore sequencing unveils the complexity of the cold-activated murine brown adipose tissue transcriptome

CA Engelhard, S Khani, S Derdak, M Bilban… - Iscience, 2023 - cell.com
Alternative transcription increases transcriptome complexity by expression of multiple
transcripts per gene. Annotation and quantification of transcripts using short-read …

Environmental community transcriptomics: strategies and struggles

J Mante, KE Groover, RM Pullen - Briefings in Functional …, 2024 - academic.oup.com
Transcriptomics is the study of RNA transcripts, the portion of the genome that is transcribed,
in a specific cell, tissue, or organism. Transcriptomics provides insight into gene expression …

ScanExitronLR: characterization and quantification of exitron splicing events in long-read RNA-seq data

J Fry, Y Li, R Yang - Bioinformatics, 2022 - academic.oup.com
Exitron splicing is a type of alternative splicing where coding sequences are spliced out.
Recently, exitron splicing has been shown to increase proteome plasticity and play a role in …

[HTML][HTML] Transcriptome identification of differential mammary genes of Kazakh horses during early pregnancy

W Ren, J Wang, Y Zeng, T Wang, J Meng, X Yao - Gene, 2024 - Elsevier
Kazakh mares have attracted widespread attention with their outstanding lactation traits.
Lactation is a complex dynamic process regulated by multiple factors. The extensive …

Identification of multi-cancer risk genes

IS Mendoza Rivera - 2024 - eprints.qut.edu.au
Cancer is the second main cause of death in the world, and genetic variation influences a
large proportion of its risk. This thesis combined GWAS, 3D chromatin organisation and …