Genomic resources in plant breeding for sustainable agriculture

M Thudi, R Palakurthi, JC Schnable… - Journal of Plant …, 2021 - Elsevier
Climate change during the last 40 years has had a serious impact on agriculture and
threatens global food and nutritional security. From over half a million plant species, cereals …

Salt stress under the scalpel–dissecting the genetics of salt tolerance

MJL Morton, M Awlia, N Al‐Tamimi, S Saade… - The Plant …, 2019 - Wiley Online Library
Salt stress limits the productivity of crops grown under saline conditions, leading to
substantial losses of yield in saline soils and under brackish and saline irrigation. Salt …

A platinum standard pan-genome resource that represents the population structure of Asian rice

Y Zhou, D Chebotarov, D Kudrna, V Llaca, S Lee… - Scientific data, 2020 - nature.com
As the human population grows from 7.8 billion to 10 billion over the next 30 years, breeders
must do everything possible to create crops that are highly productive and nutritious, while …

Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut (Arachis hypogaea)

SS Gangurde, H Wang, S Yaduru… - Plant Biotechnology …, 2020 - Wiley Online Library
Multiparental genetic mapping populations such as nested‐association mapping (NAM)
have great potential for investigating quantitative traits and associated genomic regions …

Development and use of chromosome segment substitution lines as a genetic resource for crop improvement

D Balakrishnan, M Surapaneni, S Mesapogu… - Theoretical and Applied …, 2019 - Springer
Key message CSSLs are a complete library of introgression lines with chromosomal
segments of usually a distant genotype in an adapted background and are valuable genetic …

Recommendations for choosing the genotyping method and best practices for quality control in crop genome-wide association studies

S Pavan, C Delvento, L Ricciardi, C Lotti, E Ciani… - Frontiers in …, 2020 - frontiersin.org
High-throughput genotyping boosts genome-wide association studies (GWAS) in crop
species, leading to the identification of single-nucleotide polymorphisms (SNPs) associated …

Genetic Analysis of Agronomic Traits and Grain Iron and Zinc Concentrations in a Doubled Haploid Population of Rice (Oryza sativa L.)

MIC Calayugan, AK Formantes, A Amparado… - Scientific Reports, 2020 - nature.com
The development of micronutrient dense rice varieties with good agronomic traits is one of
the sustainable and cost-effective approaches for reducing malnutrition. Identification of …

An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies

KY Morales, N Singh, FA Perez, JC Ignacio, R Thapa… - PLoS …, 2020 - journals.plos.org
Single nucleotide polymorphisms (SNPs) are highly abundant, amendable to high-
throughput genotyping, and useful for a number of breeding and genetics applications in …

Genotyping-by-sequencing based QTL mapping for rice grain yield under reproductive stage drought stress tolerance

S Yadav, N Sandhu, VK Singh, M Catolos, A Kumar - Scientific reports, 2019 - nature.com
QTLs for rice grain yield under reproductive stage drought stress (qDTY) identified earlier
with low density markers have shown linkage drag and need to be fine mapped before their …

1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice

JD Arbelaez, MS Dwiyanti, E Tandayu, K Llantada… - Rice, 2019 - Springer
Background While a multitude of genotyping platforms have been developed for rice, the
majority of them have not been optimized for breeding where cost, turnaround time …