Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
DNA metabarcoding in diet studies: Unveiling ecological aspects in aquatic and terrestrial ecosystems
Effective conservation of species and ecosystems requires the understanding of important
ecological traits, such as dietary habits, food webs, and trophic niches. In diet studies, the …
ecological traits, such as dietary habits, food webs, and trophic niches. In diet studies, the …
Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses
Assessment of biodiversity using metabarcoding data, such as from bulk or environmental
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …
aiming to detect newly arrived exotic taxa as well as track the population levels of …
Improved freshwater macroinvertebrate detection from environmental DNA through minimized nontarget amplification
DNA metabarcoding of freshwater communities typically relies on PCR amplification of a
fragment of the mitochondrial cytochrome c oxidase I (COI) gene with degenerate primers …
fragment of the mitochondrial cytochrome c oxidase I (COI) gene with degenerate primers …
Current methods and future directions in avian diet analysis
Identifying the composition of avian diets is a critical step in characterizing the roles of birds
within ecosystems. However, because birds are a diverse taxonomic group with equally …
within ecosystems. However, because birds are a diverse taxonomic group with equally …
Advancing the integration of multi‐marker metabarcoding data in dietary analysis of trophic generalists
LP da Silva, VA Mata, PB Lopes… - Molecular Ecology …, 2019 - Wiley Online Library
The application of DNA metabarcoding to dietary analysis of trophic generalists requires
using multiple markers in order to overcome problems of primer specificity and bias …
using multiple markers in order to overcome problems of primer specificity and bias …
DNA metabarcoding quantifies the relative biomass of arthropod taxa in songbird diets: Validation with camera‐recorded diets
Ecological research is often hampered by the inability to quantify animal diets. Diet
composition can be tracked through DNA metabarcoding of fecal samples, but whether …
composition can be tracked through DNA metabarcoding of fecal samples, but whether …
Marine water environmental DNA metabarcoding provides a comprehensive fish diversity assessment and reveals spatial patterns in a large oceanic area
N Fraija‐Fernández, MC Bouquieaux… - Ecology and …, 2020 - Wiley Online Library
Current methods for monitoring marine fish (including bony fishes and elasmobranchs)
diversity mostly rely on trawling surveys, which are invasive, costly, and time‐consuming …
diversity mostly rely on trawling surveys, which are invasive, costly, and time‐consuming …
The state, transport, and fate of aboveground terrestrial arthropod eDNA
RE Valentin, KE Kyle, MC Allen… - Environmental …, 2021 - Wiley Online Library
Environmental DNA (eDNA) analyses have become invaluable for detecting and monitoring
aquatic and terrestrial species and assessing site biodiversity within aquatic environments …
aquatic and terrestrial species and assessing site biodiversity within aquatic environments …