Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …

DNA metabarcoding in diet studies: Unveiling ecological aspects in aquatic and terrestrial ecosystems

LL de Sousa, SM Silva, R Xavier - Environmental DNA, 2019 - Wiley Online Library
Effective conservation of species and ecosystems requires the understanding of important
ecological traits, such as dietary habits, food webs, and trophic niches. In diet studies, the …

Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses

F Keck, M Couton, F Altermatt - Molecular Ecology Resources, 2023 - Wiley Online Library
Assessment of biodiversity using metabarcoding data, such as from bulk or environmental
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance

AM Piper, J Batovska, NOI Cogan, J Weiss… - …, 2019 - academic.oup.com
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …

Improved freshwater macroinvertebrate detection from environmental DNA through minimized nontarget amplification

F Leese, M Sander, D Buchner, V Elbrecht… - Environmental …, 2021 - Wiley Online Library
DNA metabarcoding of freshwater communities typically relies on PCR amplification of a
fragment of the mitochondrial cytochrome c oxidase I (COI) gene with degenerate primers …

Current methods and future directions in avian diet analysis

BD Hoenig, AM Snider, AM Forsman, KA Hobson… - The Auk, 2022 - academic.oup.com
Identifying the composition of avian diets is a critical step in characterizing the roles of birds
within ecosystems. However, because birds are a diverse taxonomic group with equally …

Advancing the integration of multi‐marker metabarcoding data in dietary analysis of trophic generalists

LP da Silva, VA Mata, PB Lopes… - Molecular Ecology …, 2019 - Wiley Online Library
The application of DNA metabarcoding to dietary analysis of trophic generalists requires
using multiple markers in order to overcome problems of primer specificity and bias …

DNA metabarcoding quantifies the relative biomass of arthropod taxa in songbird diets: Validation with camera‐recorded diets

YI Verkuil, M Nicolaus, R Ubels, MW Dietz… - Ecology and …, 2022 - Wiley Online Library
Ecological research is often hampered by the inability to quantify animal diets. Diet
composition can be tracked through DNA metabarcoding of fecal samples, but whether …

Marine water environmental DNA metabarcoding provides a comprehensive fish diversity assessment and reveals spatial patterns in a large oceanic area

N Fraija‐Fernández, MC Bouquieaux… - Ecology and …, 2020 - Wiley Online Library
Current methods for monitoring marine fish (including bony fishes and elasmobranchs)
diversity mostly rely on trawling surveys, which are invasive, costly, and time‐consuming …

The state, transport, and fate of aboveground terrestrial arthropod eDNA

RE Valentin, KE Kyle, MC Allen… - Environmental …, 2021 - Wiley Online Library
Environmental DNA (eDNA) analyses have become invaluable for detecting and monitoring
aquatic and terrestrial species and assessing site biodiversity within aquatic environments …