Natural variation in crops: realized understanding, continuing promise

Y Liang, HJ Liu, J Yan, F Tian - Annual review of plant biology, 2021 - annualreviews.org
Crops feed the world's population and shape human civilization. The improvement of crop
productivity has been ongoing for almost 10,000 years and has evolved from an experience …

Epigenetics for crop improvement in times of global change

I Kakoulidou, EV Avramidou, M Baránek… - Biology, 2021 - mdpi.com
Simple Summary Research on plant epigenetics aims to understand how endogenous,
biotic, and abiotic factors regulate plant development and growth independent of changes in …

A pan-Zea genome map for enhancing maize improvement

S Gui, W Wei, C Jiang, J Luo, L Chen, S Wu, W Li… - Genome biology, 2022 - Springer
Abstract Background Maize (Zea mays L.) is at the vanguard facing the upcoming breeding
challenges. However, both a super pan-genome for the Zea genus and a comprehensive …

Multi-omics revolution to promote plant breeding efficiency

U Mahmood, X Li, Y Fan, W Chang, Y Niu, J Li… - Frontiers in Plant …, 2022 - frontiersin.org
Crop production is the primary goal of agricultural activities, which is always taken into
consideration. However, global agricultural systems are coming under increasing pressure …

An evolutionary epigenetic clock in plants

N Yao, Z Zhang, L Yu, R Hazarika, C Yu, H Jang… - Science, 2023 - science.org
Molecular clocks are the basis for dating the divergence between lineages over
macroevolutionary timescales (~ 105 to 108 years). However, classical DNA-based clocks …

Genetic diversity and population structure of advanced clones selected over forty years by a potato breeding program in the USA

J Pandey, DC Scheuring, JW Koym, J Coombs… - Scientific Reports, 2021 - nature.com
Abstract Knowledge regarding genetic diversity and population structure of breeding
materials is essential for crop improvement. The Texas A&M University Potato Breeding …

Epigenetic gene regulation in plants and its potential applications in crop improvement

H Zhang, JK Zhu - Nature Reviews Molecular Cell Biology, 2024 - nature.com
DNA methylation, also known as 5-methylcytosine, is an epigenetic modification that has
crucial functions in plant growth, development and adaptation. The cellular DNA methylation …

Associations between DNA methylation and gene regulation depend on chromatin accessibility during transgenerational plasticity

SN Bogan, ME Strader, GE Hofmann - BMC biology, 2023 - Springer
Background Epigenetic processes are proposed to be a mechanism regulating gene
expression during phenotypic plasticity. However, environmentally induced changes in DNA …

Exploring the crop epigenome: a comparison of DNA methylation profiling techniques

DR Agius, A Kapazoglou, E Avramidou… - Frontiers in Plant …, 2023 - frontiersin.org
Epigenetic modifications play a vital role in the preservation of genome integrity and in the
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …

Asymmetric variation in DNA methylation during domestication and de-domestication of rice

S Cao, K Chen, K Lu, S Chen, X Zhang, C Shen… - The Plant …, 2023 - academic.oup.com
Hundreds of plant species have been domesticated to feed human civilization, while some
crops have undergone de-domestication into agricultural weeds, threatening global food …