Exact p-values for pairwise comparison of Friedman rank sums, with application to comparing classifiers

R Eisinga, T Heskes, B Pelzer, M Te Grotenhuis - BMC bioinformatics, 2017 - Springer
Abstract Background The Friedman rank sum test is a widely-used nonparametric method in
computational biology. In addition to examining the overall null hypothesis of no significant …

Validation of reference genes for the normalization of RT-qPCR gene expression in Acanthamoeba spp.

M Köhsler, D Leitsch, N Müller, J Walochnik - Scientific reports, 2020 - nature.com
Acanthamoebae are potentially pathogenic organisms, with a highly unique, yet still
insufficiently investigated metabolism. Many open questions can be addressed by gene …

[HTML][HTML] Screening of reliable reference genes for the normalization of RT-qPCR in chicken gastrointestinal tract

J Chen, Z Chen, J Zhang, W Zhuang, X Zheng - Poultry Science, 2023 - Elsevier
The application of reverse transcription quantitative real-time PCR technology for the
production of gene tissue expression profiles is a widely employed approach in molecular …

Selection of housekeeping genes for quantitative gene expression analysis in yellow-feathered broilers

J Zhang, YY Gao, YQ Huang, Q Fan, XT Lu… - Italian Journal of …, 2018 - Taylor & Francis
The aim of this study was designed to select housekeeping genes for quantitative gene
expression analysis in yellow-feathered broilers. Twelve 3-week-old chickens were …

[HTML][HTML] Identification of reliable reference genes for quantitative real-time PCR in lung and heart of pulmonary hypertensive chickens

H Hassanpour, S Bahadoran, F Farhadfar, ZF Chamali… - Poultry science, 2018 - Elsevier
Accurate normalization in real-time quantitative PCR is an important step in quantification of
gene transcription pattern, in which proper application of stable reference gene (s) is crucial …

Avian infectious bronchitis virus disrupts the melanoma differentiation associated gene 5 (MDA5) signaling pathway by cleavage of the adaptor protein MAVS

L Yu, X Zhang, T Wu, J Su, Y Wang, Y Wang… - BMC veterinary …, 2017 - Springer
Background Melanoma differentiation associated gene 5 (MDA5) and retinoic acid-inducible
gene-I (RIG-I) selectively sense cytoplasmic viral RNA to induce an antiviral immune …

Investigation of chicken housekeeping genes using next-generation sequencing data

K Hasanpur, S Hosseinzadeh, A Mirzaaghayi… - Frontiers in …, 2022 - frontiersin.org
Accurate normalization of the gene expression assays, using housekeeping genes (HKGs),
is critically necessary. To do so, selection of a proper set of HKGs for a specific experiment is …

Screening of reference genes for RT-qPCR in chicken adipose tissue and adipocytes

W Na, Y Wang, P Gong, X Zhang, K Zhang… - Frontiers in …, 2021 - frontiersin.org
Reverse transcription quantitative real-time PCR is the most commonly used method to
detect gene expression levels. In experiments, it is often necessary to correct and …

The 60S ribosomal protein L13 is the most preferable reference gene to investigate gene expression in selected organs from turkeys and chickens, in context of …

T Mitra, I Bilic, M Hess, D Liebhart - Veterinary research, 2016 - Springer
Abstract Evaluation of reference genes for expression studies in chickens and turkeys is very
much limited and unavailable for various infectious models. In this study, eight candidate …

Embryonic transcriptome unravels mechanisms and pathways underlying embryonic development with respect to muscle growth, egg production, and plumage …

M Kanakachari, R Ashwini, RN Chatterjee… - Frontiers in …, 2022 - frontiersin.org
Background: Muscle development, egg production, and plumage colors are different
between native and broiler chickens. The study was designed to investigate why improved …