Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology

FJ O'Reilly, J Rappsilber - Nature structural & molecular biology, 2018 - nature.com
Over the past decade, cross-linking mass spectrometry (CLMS) has developed into a robust
and flexible tool that provides medium-resolution structural information. CLMS data provide …

Cross‐linking/mass spectrometry for studying protein structures and protein–protein interactions: where are we now and where should we go from here?

A Sinz - Angewandte Chemie International Edition, 2018 - Wiley Online Library
Structural mass spectrometry (MS) is gaining increasing importance for deriving valuable
three‐dimensional structural information on proteins and protein complexes, and it …

[HTML][HTML] Anatomy of a crosslinker

A Belsom, J Rappsilber - Current opinion in chemical biology, 2021 - Elsevier
Crosslinking mass spectrometry has become a core technology in structural biology and is
expanding its reach towards systems biology. Its appeal lies in a rapid workflow, high …

Protein tertiary structure by crosslinking/mass spectrometry

M Schneider, A Belsom, J Rappsilber - Trends in biochemical sciences, 2018 - cell.com
Observing the structures of proteins within the cell and tracking structural changes under
different cellular conditions are the ultimate challenges for structural biology. This, however …

Carboxyl-photo-reactive MS-cleavable cross-linkers: unveiling a hidden aspect of diazirine-based reagents

C Iacobucci, M Götze, C Piotrowski, C Arlt… - Analytical …, 2018 - ACS Publications
A major challenge in cross-linking/mass spectrometry (MS) is targeting carboxyl functions in
proteins under physiological conditions that do not disturb the protein's conformation. Cross …

Chemical cross-linking in the structural analysis of protein assemblies

F Chu, DT Thornton, HT Nguyen - Methods, 2018 - Elsevier
For decades, chemical cross-linking of proteins has been an established method to study
protein interaction partners. The chemical cross-linking approach has recently been revived …

Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13

JE Fajardo, R Shrestha, N Gil, A Belsom… - Proteins: Structure …, 2019 - Wiley Online Library
With the advance of experimental procedures obtaining chemical crosslinking information is
becoming a fast and routine practice. Information on crosslinks can greatly enhance the …

In-search assignment of monoisotopic peaks improves the identification of cross-linked peptides

S Lenz, SH Giese, L Fischer… - Journal of proteome …, 2018 - ACS Publications
Cross-linking/mass spectrometry has undergone a maturation process akin to standard
proteomics by adapting key methods such as false discovery rate control and quantification …

Small angle X‐ray scattering and cross‐linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy

TL Ogorzalek, GL Hura, A Belsom… - PROTEINS: structure …, 2018 - Wiley Online Library
Experimental data offers empowering constraints for structure prediction. These constraints
can be used to filter equivalently scored models or more powerfully within optimization …

Free radical‐initiated peptide sequencing (FRIPS)‐based cross‐linkers for improved peptide and protein structure analysis

C Iacobucci, M Schäfer, A Sinz - Mass Spectrometry Reviews, 2019 - Wiley Online Library
Free radical‐initiated peptide sequencing (FRIPS) has recently been introduced as an
analytical strategy to create peptide radical ions in a predictable and effective way by …