Catalytic strategies of self-cleaving ribozymes
JC Cochrane, SA Strobel - Accounts of chemical research, 2008 - ACS Publications
Five naturally occurring nucleolytic ribozymes have been identified: the hammerhead,
hairpin, glmS, hepatitis delta virus (HDV), and Varkud satellite (VS) ribozymes. All of these …
hairpin, glmS, hepatitis delta virus (HDV), and Varkud satellite (VS) ribozymes. All of these …
Strategies for the design of drugs targeting RNA and RNA–protein complexes
T Hermann - Angewandte Chemie International Edition, 2000 - Wiley Online Library
In many steps of gene replication and expression, RNA molecules participate as key
players, which renders them attractive targets for therapeutic intervention. While the function …
players, which renders them attractive targets for therapeutic intervention. While the function …
Crystal structure of a hepatitis delta virus ribozyme
The self-cleaving ribozyme of the hepatitis delta virus (HDV) is the only catalytic RNA known
to be required for the viability of a human pathogen. We obtained crystals of a 72-nucleotide …
to be required for the viability of a human pathogen. We obtained crystals of a 72-nucleotide …
Reversible cross-linking combined with immunoprecipitation to study RNA–protein interactions in vivo
S Niranjanakumari, E Lasda, R Brazas… - Methods, 2002 - Elsevier
Protein–RNA interactions play indispensable structural, catalytic, and regulatory roles within
the cell. Understanding their physical association in vivo provides valuable insight into their …
the cell. Understanding their physical association in vivo provides valuable insight into their …
General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme
S Nakano, DM Chadalavada, PC Bevilacqua - Science, 2000 - science.org
Many protein enzymes use general acid-base catalysis as a way to increase reaction rates.
The amino acid histidine is optimized for this function because it has ap K a (where K a is the …
The amino acid histidine is optimized for this function because it has ap K a (where K a is the …
One sequence, two ribozymes: implications for the emergence of new ribozyme folds
EA Schultes, DP Bartel - Science, 2000 - science.org
We describe a single RNA sequence that can assume either of two ribozyme folds and
catalyze the two respective reactions. The two ribozyme folds share no evolutionary history …
catalyze the two respective reactions. The two ribozyme folds share no evolutionary history …
[HTML][HTML] Peripheral regions of natural hammerhead ribozymes greatly increase their self‐cleavage activity
Natural hammerhead ribozymes are mostly found in some viroid and viroid‐like RNAs and
catalyze their cis cleavage during replication. Hammerheads have been manipulated to act …
catalyze their cis cleavage during replication. Hammerheads have been manipulated to act …
Identification of a novel deltavirus in boa constrictors
U Hetzel, L Szirovicza, T Smura, B Prähauser… - MBio, 2019 - Am Soc Microbiol
Hepatitis D virus (HDV) forms the genus Deltavirus unassigned to any virus family. HDV is a
satellite virus and needs hepatitis B virus (HBV) to make infectious particles. Deltaviruses …
satellite virus and needs hepatitis B virus (HBV) to make infectious particles. Deltaviruses …
Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme
H Isambert, ED Siggia - Proceedings of the National …, 2000 - National Acad Sciences
A quantitative understanding of nucleic acid hybridization is essential to many aspects of
biotechnology, such as DNA microarrays, as well as to the structure and folding kinetics of …
biotechnology, such as DNA microarrays, as well as to the structure and folding kinetics of …
An improved method for recovering rabies virus from cloned cDNA
K Inoue, Y Shoji, I Kurane, T Iijima, T Sakai… - Journal of virological …, 2003 - Elsevier
A new system for recovery of rabies virus from cDNA plasmid, the transcription of which was
driven by cellular RNA polymerase II, was developed. The plasmid contains full-length viral …
driven by cellular RNA polymerase II, was developed. The plasmid contains full-length viral …