[HTML][HTML] A renaissance in RNA synthetic biology: new mechanisms, applications and tools for the future
Highlights•We review recent progress in RNA synthetic biology.•New advances in synthetic
RNA regulator design have created high-performing/functioning parts.•New generation of …
RNA regulator design have created high-performing/functioning parts.•New generation of …
Regulatory non-coding sRNAs in bacterial metabolic pathway engineering
Non-coding RNAs (ncRNAs) are versatile and powerful controllers of gene expression that
have been increasingly linked to cellular metabolism and phenotype. In bacteria, identified …
have been increasingly linked to cellular metabolism and phenotype. In bacteria, identified …
Synthetic biology of small RNAs and riboswitches
JK Villa, Y Su, LM Contreras… - Microbiology …, 2018 - Am Soc Microbiol
In bacteria and archaea, small RNAs (sRNAs) regulate complex networks through antisense
interactions with target mRNAs in trans, and riboswitches regulate gene expression in cis …
interactions with target mRNAs in trans, and riboswitches regulate gene expression in cis …
Noncoding RNAs: biology and applications—a Keystone Symposia report
The human transcriptome contains many types of noncoding RNAs, which rival the number
of protein‐coding species. From long noncoding RNAs (lncRNAs) that are over 200 …
of protein‐coding species. From long noncoding RNAs (lncRNAs) that are over 200 …
Development of Design Rules for Reliable Antisense RNA Behavior in E. coli
A Hoynes-O'Connor, TS Moon - ACS synthetic biology, 2016 - ACS Publications
A key driver of synthetic biology is the development of designable genetic parts with
predictable behaviors that can be quickly implemented in complex genetic systems …
predictable behaviors that can be quickly implemented in complex genetic systems …
High-throughput in vivo mapping of RNA accessible interfaces to identify functional sRNA binding sites
MK Mihailovic, J Vazquez-Anderson, Y Li, V Fry… - Nature …, 2018 - nature.com
Herein we introduce a high-throughput method, INTERFACE, to reveal the capacity of
contiguous RNA nucleotides to establish in vivo intermolecular RNA interactions for the …
contiguous RNA nucleotides to establish in vivo intermolecular RNA interactions for the …
Multilevel regulation of bacterial gene expression with the combined STAR and antisense RNA system
Synthetic small RNA regulators have emerged as a versatile tool to predictably control
bacterial gene expression. Owing to their simple design principles, small size, and highly …
bacterial gene expression. Owing to their simple design principles, small size, and highly …
Strain engineering via regulatory noncoding RNAs: not a one-blueprint-fits-all
SH Cho, K Haning, LM Contreras - Current Opinion in Chemical …, 2015 - Elsevier
Highlights•Regulatory noncoding RNAs (ncRNAs) are powerful tools in metabolic
engineering.•Adjusting expression of natural ncRNAs allows regulation of multiple …
engineering.•Adjusting expression of natural ncRNAs allows regulation of multiple …
Systematic probing of the bacterial RNA structurome to reveal new functions
Z Ignatova, F Narberhaus - Current Opinion in Microbiology, 2017 - Elsevier
Highlights•NGS-based RNA probing enables transcriptome-wide structurome
determination.•RNA structuromics reveals insights into RNA-structure-function …
determination.•RNA structuromics reveals insights into RNA-structure-function …