[HTML][HTML] Origins and evolution of viruses of eukaryotes: The ultimate modularity

EV Koonin, VV Dolja, M Krupovic - Virology, 2015 - Elsevier
Viruses and other selfish genetic elements are dominant entities in the biosphere, with
respect to both physical abundance and genetic diversity. Various selfish elements …

[HTML][HTML] Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer

VV Dolja, EV Koonin - Virus research, 2018 - Elsevier
Virus metagenomics is a young research filed but it has already transformed our
understanding of virus diversity and evolution, and illuminated at a new level the …

Redefining the invertebrate RNA virosphere

M Shi, XD Lin, JH Tian, LJ Chen, X Chen, CX Li… - Nature, 2016 - nature.com
Current knowledge of RNA virus biodiversity is both biased and fragmentary, reflecting a
focus on culturable or disease-causing agents. Here we profile the transcriptomes of over …

Hiding in plain sight: New virus genomes discovered via a systematic analysis of fungal public transcriptomes

KB Gilbert, EE Holcomb, RL Allscheid, JC Carrington - PLoS One, 2019 - journals.plos.org
The distribution and diversity of RNA viruses in fungi is incompletely understood due to the
often cryptic nature of mycoviral infections and the focused study of primarily pathogenic …

Fungal negative-stranded RNA virus that is related to bornaviruses and nyaviruses

L Liu, J Xie, J Cheng, Y Fu, G Li… - Proceedings of the …, 2014 - National Acad Sciences
Mycoviruses are widespread in nature and often occur with dsRNA and positive-stranded
RNA genomes. Recently, strong evidence from RNA sequencing analysis suggested that …

[HTML][HTML] A decade of RNA virus metagenomics is (not) enough

AL Greninger - Virus research, 2018 - Elsevier
It is hard to overemphasize the role that metagenomics has had on our recent understanding
of RNA virus diversity. Metagenomics in the 21st century has brought with it an explosion in …

Deep roots and splendid boughs of the global plant virome

VV Dolja, M Krupovic, EV Koonin - Annual review of …, 2020 - annualreviews.org
Land plants host a vast and diverse virome that is dominated by RNA viruses, with major
additional contributions from reverse-transcribing and single-stranded (ss) DNA viruses …

Virome analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis ticks reveals novel highly divergent vertebrate and invertebrate viruses

R Tokarz, SH Williams, S Sameroff… - Journal of …, 2014 - Am Soc Microbiol
ABSTRACT A wide range of bacterial pathogens have been identified in ticks, yet the
diversity of viruses in ticks is largely unexplored. In the United States, Amblyomma …

Negative-strand RNA viruses: the plant-infecting counterparts

R Kormelink, ML Garcia, M Goodin, T Sasaya… - Virus research, 2011 - Elsevier
While a large number of negative-strand (−) RNA viruses infect animals and humans, a
relative small number have plants as their primary host. Some of these have been classified …

A wide extent of inter-strain diversity in virulent and vaccine strains of alphaherpesviruses

ML Szpara, YR Tafuri, L Parsons, SR Shamim… - PLoS …, 2011 - journals.plos.org
Alphaherpesviruses are widespread in the human population, and include herpes simplex
virus 1 (HSV-1) and 2, and varicella zoster virus (VZV). These viral pathogens cause …