Advances in the characterization of RNA‐binding proteins
D Marchese, NS de Groot… - Wiley …, 2016 - Wiley Online Library
From transcription, to transport, storage, and translation, RNA depends on association with
different RNA‐binding proteins (RBPs). Methods based on next‐generation sequencing and …
different RNA‐binding proteins (RBPs). Methods based on next‐generation sequencing and …
A concentration-dependent liquid phase separation can cause toxicity upon increased protein expression
Multiple human diseases are associated with a liquid-to-solid phase transition resulting in
the formation of amyloid fibers or protein aggregates. Here, we present an alternative …
the formation of amyloid fibers or protein aggregates. Here, we present an alternative …
RNA structure drives interaction with proteins
N Sanchez de Groot, A Armaos… - Nature …, 2019 - nature.com
The combination of high-throughput sequencing and in vivo crosslinking approaches leads
to the progressive uncovering of the complex interdependence between cellular …
to the progressive uncovering of the complex interdependence between cellular …
Reduced proteasome activity in the aging brain results in ribosome stoichiometry loss and aggregation
E Kelmer Sacramento, JM Kirkpatrick… - Molecular systems …, 2020 - embopress.org
A progressive loss of protein homeostasis is characteristic of aging and a driver of
neurodegeneration. To investigate this process quantitatively, we characterized proteome …
neurodegeneration. To investigate this process quantitatively, we characterized proteome …
Phase separation drives X-chromosome inactivation: a hypothesis
The long non-coding RNA Xist induces heterochromatinization of the X chromosome by
recruiting repressive protein complexes to chromatin. Here we gather evidence, from the …
recruiting repressive protein complexes to chromatin. Here we gather evidence, from the …
ORC1 binds to cis-transcribed RNAs for efficient activation of replication origins
Cells must coordinate the activation of thousands of replication origins dispersed throughout
their genome. Active transcription is known to favor the formation of mammalian origins …
their genome. Active transcription is known to favor the formation of mammalian origins …
Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins
Motivation: RNA binding proteins (RBPs) play important roles in post-transcriptional control
of gene expression, including splicing, transport, polyadenylation and RNA stability. To …
of gene expression, including splicing, transport, polyadenylation and RNA stability. To …
catRAPID signature: identification of ribonucleoproteins and RNA-binding regions
Motivation: Recent technological advances revealed that an unexpected large number of
proteins interact with transcripts even if the RNA-binding domains are not annotated. We …
proteins interact with transcripts even if the RNA-binding domains are not annotated. We …
RNA-binding and prion domains: the Yin and Yang of phase separation
NL Gotor, A Armaos, G Calloni… - Nucleic acids …, 2020 - academic.oup.com
Proteins and RNAs assemble in membrane-less organelles that organize intracellular
spaces and regulate biochemical reactions. The ability of proteins and RNAs to form …
spaces and regulate biochemical reactions. The ability of proteins and RNAs to form …
Phase separation of chromatin and small RNA pathways in plants
Gene expression can be modulated by epigenetic mechanisms, including chromatin
modifications and small regulatory RNAs. These pathways are unevenly distributed within a …
modifications and small regulatory RNAs. These pathways are unevenly distributed within a …