Tasks, techniques, and tools for genomic data visualization
Genomic data visualization is essential for interpretation and hypothesis generation as well
as a valuable aid in communicating discoveries. Visual tools bridge the gap between …
as a valuable aid in communicating discoveries. Visual tools bridge the gap between …
BRAD V3. 0: an upgraded Brassicaceae database
Abstract The Brassicaceae Database (BRAD version 3.0, BRAD V3. 0; http://brassicadb. cn)
has evolved from the former Brassica Database (BRAD V2. 0), and represents an important …
has evolved from the former Brassica Database (BRAD V2. 0), and represents an important …
vcfr: a package to manipulate and visualize variant call format data in R
BJ Knaus, NJ Grünwald - Molecular ecology resources, 2017 - Wiley Online Library
Software to call single‐nucleotide polymorphisms or related genetic variants has converged
on the variant call format (VCF) as the output format of choice. This has created a need for …
on the variant call format (VCF) as the output format of choice. This has created a need for …
Insect nuclear receptors
SE Fahrbach, G Smagghe… - Annual review of …, 2012 - annualreviews.org
The nuclear receptors (NRs) of metazoans are an ancient family of transcription factors
defined by conserved DNA-and ligand-binding domains (DBDs and LBDs, respectively) …
defined by conserved DNA-and ligand-binding domains (DBDs and LBDs, respectively) …
Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel …
P Wiemann, CMK Sieber, KW Von Bargen… - PLoS …, 2013 - journals.plos.org
The fungus Fusarium fujikuroi causes “bakanae” disease of rice due to its ability to produce
gibberellins (GAs), but it is also known for producing harmful mycotoxins. However, the …
gibberellins (GAs), but it is also known for producing harmful mycotoxins. However, the …
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology
Pathway Tools is a bioinformatics software environment with a broad set of capabilities. The
software provides genome-informatics tools such as a genome browser, sequence …
software provides genome-informatics tools such as a genome browser, sequence …
Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica
A Zuccaro, U Lahrmann, U Güldener, G Langen… - PLoS …, 2011 - journals.plos.org
Recent sequencing projects have provided deep insight into fungal lifestyle-associated
genomic adaptations. Here we report on the 25 Mb genome of the mutualistic root symbiont …
genomic adaptations. Here we report on the 25 Mb genome of the mutualistic root symbiont …
BRAD, the genetics and genomics database for Brassica plants
Background Brassica species include both vegetable and oilseed crops, which are very
important to the daily life of common human beings. Meanwhile, the Brassica species …
important to the daily life of common human beings. Meanwhile, the Brassica species …
RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
This article summarizes our progress with RegulonDB (http://regulondb. ccg. unam. mx/)
during the past 2 years. We have kept up-to-date the knowledge from the published …
during the past 2 years. We have kept up-to-date the knowledge from the published …
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
Pathway Tools is a production-quality software environment for creating a type of model-
organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc …
organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc …