High-end ion mobility mass spectrometry: A current review of analytical capacity in omics applications and structural investigations
Mass spectrometry-based biomolecular analyses have become permanent fixtures of
academic, industrial, and clinical research settings. The rise in utilization of mass …
academic, industrial, and clinical research settings. The rise in utilization of mass …
Label‐free single cell proteomics utilizing ultrafast LC and MS instrumentation: A valuable complementary technique to multiplexing
M Matzinger, RL Mayer, K Mechtler - Proteomics, 2023 - Wiley Online Library
The ability to map a proteomic fingerprint to transcriptomic data would master the
understanding of how gene expression translates into actual phenotype. In contrast to …
understanding of how gene expression translates into actual phenotype. In contrast to …
Robust and easy-to-use one-pot workflow for label-free single-cell proteomics
M Matzinger, E Müller, G Dürnberger… - Analytical …, 2023 - ACS Publications
The analysis of ultralow input samples or even individual cells is essential to answering a
multitude of biomedical questions, but current proteomic workflows are limited in their …
multitude of biomedical questions, but current proteomic workflows are limited in their …
The one hour human proteome
LR Serrano, TM Peters-Clarke, TN Arrey… - Molecular & Cellular …, 2024 - ASBMB
We describe deep analysis of the human proteome in less than 1 h. We achieve this
expedited proteome characterization by leveraging state-of-the-art sample preparation …
expedited proteome characterization by leveraging state-of-the-art sample preparation …
Instrumentation at the leading edge of proteomics
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
DirectMS1Quant: ultrafast quantitative proteomics with MS/MS-free mass spectrometry
Recently, we presented the DirectMS1 method of ultrafast proteome-wide analysis based on
minute-long LC gradients and MS1-only mass spectra acquisition. Currently, the method …
minute-long LC gradients and MS1-only mass spectra acquisition. Currently, the method …
Proteomics‐based scoring of cellular response to stimuli for improved characterization of signaling pathway activity
EM Kazakova, EM Solovyeva, LI Levitsky… - …, 2023 - Wiley Online Library
Omics technologies focus on uncovering the complex nature of molecular mechanisms in
cells and organisms, including biomarkers and drug targets discovery. Aiming at these tasks …
cells and organisms, including biomarkers and drug targets discovery. Aiming at these tasks …
A deep learning framework for hepatocellular carcinoma diagnosis using MS1 data
W Xu, L Zhang, X Qian, N Sun, X Tu, D Zhou… - Scientific Reports, 2024 - nature.com
Clinical proteomics analysis is of great significance for analyzing pathological mechanisms
and discovering disease-related biomarkers. Using computational methods to accurately …
and discovering disease-related biomarkers. Using computational methods to accurately …
Mass spectrometry-based chemical proteomics for drug target discoveries
II Fedorov, VI Lineva, IA Tarasova, MV Gorshkov - Biochemistry (Moscow), 2022 - Springer
Chemical proteomics, emerging rapidly in recent years, has become a main approach to
identifying interactions between the small molecules and proteins in the cells on a proteome …
identifying interactions between the small molecules and proteins in the cells on a proteome …
Deep learning powers protein identification from precursor ms information
Y Dai, Y Yang, E Wu, C Shen… - Journal of Proteome …, 2024 - ACS Publications
Proteome analysis currently heavily relies on tandem mass spectrometry (MS/MS), which
does not fully utilize MS1 features, as many precursors remain unselected for MS/MS …
does not fully utilize MS1 features, as many precursors remain unselected for MS/MS …