Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
The widespread occurrence of repetitive stretches of DNA in genomes of organisms across
the tree of life imposes fundamental challenges for sequencing, genome assembly, and …
the tree of life imposes fundamental challenges for sequencing, genome assembly, and …
Widespread deviant patterns of heterozygosity in whole-genome sequencing due to autopolyploidy, repeated elements, and duplication
X Dallaire, R Bouchard, P Hénault… - Genome Biology and …, 2023 - academic.oup.com
Most population genomic tools rely on accurate single nucleotide polymorphism (SNP)
calling and filtering to meet their underlying assumptions. However, genomic complexity …
calling and filtering to meet their underlying assumptions. However, genomic complexity …
Novel Microsatellite Loci, Cross-Species Validation of Multiplex Assays, and By-Catch Mitochondrial Genomes on Ochthebius Beetles from Supratidal Rockpools
Simple Summary Supratidal rockpools stand out as some of the most extreme environments
on the planet. These pools are exposed to the wave's action, fluctuations in sea level …
on the planet. These pools are exposed to the wave's action, fluctuations in sea level …
Genome-wide discovery of single- and multi-locus simple sequence repeat markers and their characterization in Dendrocalamus strictus: a commercial polyploid …
Dendrocalamus strictus, popularly known as “lathi baans”, is a multipurpose bamboo
species known for its manifold domestic and industrial applications. In the current scenario …
species known for its manifold domestic and industrial applications. In the current scenario …
The salmon louse genome may be much larger than sequencing suggests
GA Wyngaard, R Skern-Mauritzen, K Malde… - Scientific Reports, 2022 - nature.com
The genome size of organisms impacts their evolution and biology and is often assumed to
be characteristic of a species. Here we present the first published estimates of genome size …
be characteristic of a species. Here we present the first published estimates of genome size …
Muver, a computational framework for accurately calling accumulated mutations
AB Burkholder, SA Lujan, CA Lavender, SA Grimm… - BMC genomics, 2018 - Springer
Background Identification of mutations from next-generation sequencing data typically
requires a balance between sensitivity and accuracy. This is particularly true of DNA …
requires a balance between sensitivity and accuracy. This is particularly true of DNA …
DNA-nanopore technology: a human perspective
A Gray - Emerging Topics in Life Sciences, 2021 - portlandpress.com
The purpose of this article is to give a brief overview of the current state of nanopore
sequencing in relation to forensic science with a brief outline of where it stands in relation to …
sequencing in relation to forensic science with a brief outline of where it stands in relation to …
Development of microsatellite loci and optimization of a multiplex assay for Latibulus argiolus (Hymenoptera: Ichneumonidae), the specialized parasitoid of paper …
A Kostro-Ambroziak, A Siekiera, M Czajkowska… - Scientific Reports, 2020 - nature.com
Microsatellite loci are commonly used markers in population genetic studies. In this study,
we present 40 novel and polymorphic microsatellite loci elaborated for the ichneumonid …
we present 40 novel and polymorphic microsatellite loci elaborated for the ichneumonid …
First microsatellite markers for the European Robin (Erithacus rubecula) and their application in analysis of parentage and genetic diversity
A Gwiazdowska, O Karpińska… - Scientific Reports, 2021 - nature.com
Abstract The European Robin is a small passerine bird associated with woodlands of
Eurasia and North Africa. Despite being relatively widespread and common, little is known of …
Eurasia and North Africa. Despite being relatively widespread and common, little is known of …
Slippage of the primer strand in the primer extension reaction with modified 2'-deoxyuridine triphosphates
VA Vasiliskov, VE Shershov, RA Miftahov… - Russian Journal of …, 2020 - Springer
An effect of primer strand slippage was observed in the primer extension reaction due to
replacement of thymidine triphosphate for modified analogs of dUTP. The effect was …
replacement of thymidine triphosphate for modified analogs of dUTP. The effect was …