Emerging roles of linker histones in regulating chromatin structure and function

DV Fyodorov, BR Zhou, AI Skoultchi… - Nature reviews Molecular …, 2018 - nature.com
Together with core histones, which make up the nucleosome, the linker histone (H1) is one
of the five main histone protein families present in chromatin in eukaryotic cells. H1 binds to …

Control of DNA replication timing in the 3D genome

C Marchal, J Sima, DM Gilbert - Nature Reviews Molecular Cell Biology, 2019 - nature.com
The 3D organization of mammalian chromatin was described more than 30 years ago by
visualizing sites of DNA synthesis at different times during the S phase of the cell cycle …

Single-cell dynamics of genome-nuclear lamina interactions

J Kind, L Pagie, H Ortabozkoyun, S Boyle, SS De Vries… - Cell, 2013 - cell.com
The nuclear lamina (NL) interacts with hundreds of large genomic regions termed lamina
associated domains (LADs). The dynamics of these interactions and the relation to …

DNA replication fork speed underlies cell fate changes and promotes reprogramming

T Nakatani, J Lin, F Ji, A Ettinger, J Pontabry… - Nature Genetics, 2022 - nature.com
Totipotency emerges in early embryogenesis, but its molecular underpinnings remain poorly
characterized. In the present study, we employed DNA fiber analysis to investigate how …

Nuclear compartments: an incomplete primer to nuclear compartments, bodies, and genome organization relative to nuclear architecture

AS Belmont - Cold Spring Harbor perspectives in biology, 2022 - cshperspectives.cshlp.org
This work reviews nuclear compartments, defined broadly to include distinct nuclear
structures, bodies, and chromosome domains. It first summarizes original cytological …

DNA replication in eukaryotic cells

SP Bell, A Dutta - Annual review of biochemistry, 2002 - annualreviews.org
▪ Abstract The maintenance of the eukaryotic genome requires precisely coordinated
replication of the entire genome each time a cell divides. To achieve this coordination …

DNA replication timing

N Rhind, DM Gilbert - Cold Spring Harbor perspectives …, 2013 - cshperspectives.cshlp.org
Patterns of replication within eukaryotic genomes correlate with gene expression, chromatin
structure, and genome evolution. Recent advances in genome-scale mapping of replication …

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

T Ryba, I Hiratani, J Lu, M Itoh, M Kulik… - Genome …, 2010 - genome.cshlp.org
To identify evolutionarily conserved features of replication timing and their relationship to
epigenetic properties, we profiled replication timing genome-wide in four human embryonic …

[HTML][HTML] Identifying cis elements for spatiotemporal control of mammalian DNA replication

J Sima, A Chakraborty, V Dileep, M Michalski, KN Klein… - Cell, 2019 - cell.com
The temporal order of DNA replication (replication timing [RT]) is highly coupled with
genome architecture, but cis-elements regulating either remain elusive. We created a series …

Eukaryotic chromosome DNA replication: where, when, and how?

H Masai, S Matsumoto, Z You… - Annual review of …, 2010 - annualreviews.org
DNA replication is central to cell proliferation. Studies in the past six decades since the
proposal of a semiconservative mode of DNA replication have confirmed the high degree of …